Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0407 ATGGCTAGGGAAGTACAGGGCATTTTAAGCCAACAATTATACATGGAAAGACCGAGGGTTGTTTCGGATGTACGAATTACTGCCGATCATAGTGTGAGTGATGTTTGTGTACAGACGGGTGAGGTATTTTCTCCCCAGTTTATGCGGGATCGAGTTGCTTTAAGAAGATTGTCTGACATGAGTGATGGAGATCAACAACAACAACAGCAAAAGAGAATAGGTCTTGGGTTTAATCAGAGCAACCAGTTGGTGTATGAGGATCTCAGTGGCATTCTTGGACTCAAGAGGATGAATTCTGAAAGCAGTTCAGAACTGTCATCAACGCCAATTACTGTTTATGCAGCTGAAAGGGACAACACGGTTTATCCTAACAATGCAAGCAAATGTCAGTGGGAAGATAGTGCTACTGGACAAGCATCTGGTGCATATGCTGATGAAATTAACCGAGGAGTTCAATTTGGCCCCATGACATCGACCTTGTATGCGTTGGATTCACCTCGTTCATGTTATCCTTGTGGGGCCGTATTTGGAGATTTCTCTGCCAATGACAAGATGAAATTTCTCTGTAGTTTTGGAGGTAGAATACTACCAAGGCCTAATGATGGGAAGCTTAGATATGTAGGTGGAGAAACACGCATCGTATCCATTAGAAAAAACATCTCATGTGAAGAACTTACCAAAAAGACTTACGCTGTCTGTAAATATGCTCACACGATAAAGTACCAGCTTCCTGGTGAAGATCTTGATTCACTTATCTCTGTCTGTTCTGATGAGGATCTTCATCATATGATAGAGGAATATCATGAGCTAGAAAATGCAGAGGGTTCTCAAAGACTTAGAATTTTTCTTATTTCTTCAAATGATTGTTGTGAGAGCCCTCCTTCTATTGAAGGAAGGGTAGTTCAACCAATTGATGTTGATTATCAATATGTTGCGGCTGTGAACGGTATGCTAGACCCAAGTCTTCAAAGGAGCTCTAGTGGGCAGAGTTTCACAAGCCAGACAAGCCAGGTGGGAGCCATCTCAGATCATAGTACCAATTTTCATACTGATTCGTCACATGCTACAGACTCAAAAGAGGCCAATTCACCAATGCCAAATTTGGCGGGAATGTTTCCTAGACCTGGCGGTCAATTGTTAAATCACATTCAAGTCCCACTCAAGTCATTTAATCAATCACCTTTAATTTCTCCGGTTACAGTAATGCAAAAAGATTTCAAGAATGTGGATGCAACATATATAGAAGATGCTAGAAACTTCACTCCATTTGTTTCGGGAAAACATCCATGTGATATGGTTTATTATGTTGATGCAGCGGGCTATCACAATCATCTTTACCATGGTTCTCCATTGATGAATTATCATCATGAAAAATCTACAGCGGAAACTGATGAGACATACAAAGTTCTTAATGTTCATTTCCCACGAAGCTCCAGTGAAAATTTTGTGCCTGCACCCAATTGGGGTCTAAGTGATACACATCCAATGAAAACTATGCTCAAGGAACGGGCAGTAAATTATGAACAGTTATGCTCTGATGCGGAGTATTTGATTCAGCTAAGATCTGGAACCACCCATATGGGACAAAGAATTATGCATTCACATTCTGAGCCCCTACTGCTGGAACAGGATAAAAAATCGAATCATGTAGGACTCTATCCACTGAACTCATTCAACGATAGTGATCAGTCACCTTCGTTGGCAATGTCAAGTTCCTTGCAGGATTTGCCAACAATGTGGAAACAGAGAGTTGACATGGAATTTCAAGATGCTAAATATGAGAATCATCGAGTGTTAGCATCTGGAAGTGATAATGAAACATATGAGGAATGCAATTTTGATGAAAAGAACGCTAATTTCAATGGAAGTATTTATGTTCCATCACTTAATGATGAAGAAAAATACAGAAATTTGCAGCATGTTGACTACAAACAAAATGGTTGTCTCCCCAAAGAGGTTCAAAGCCTTGCAGGCAGATCTTCTTCTGAACGACGTCTTCAATTAGAAAATTCTGCAGATACCACGGGTGGCCCCTCCATCATTTCCCATTTAGAAAGAACTGCTCCAAAAATTTTCGAGGAGAGCCAATATTCTACCAAGGATCGACAAGCAACTTGTGATATAGTAAGGAGCCAACCGTTCTCTTGCACATCTTCTGATCTCCTACCTCATACAACTCTAGCTTTGAGCGATAAAAGGATCATAAATCAGGAACCAACATGGAATAGCTCTGCTTCAGGTAGAGAGGTTTCTCTAGGCGACGAGAACTTTGTAACCTGTCATTACCGCAAGGTTGCAGCCCATAGCAGAAAAAAGAGCAACTGTGATGATGCTATCTTTATCAAATCATCACACTCAGATGATTCTCGTGGCAATGAGGATGGAGAGTTAGCTGTAATAGTTGAAGATGTAACTCATAGTATGCCTCCTGACATACCCTTAGCTTCAGGAGTTGTCCCAAGGGTTGAAAACGAGGCCAGCGATGAATGTCCATCTTCAAGAGGAAATGATGCTCTGAGTTCTAGTTCAGAAACTGACAATGAGGATGCCGACAGTATCCTTAGTTCAAGGGATGAGTCTATGAGCGAGGCAACAATAGCTGAAATCGAAGCTGGCATCTATGGCCTGCAGATCATAAAGGATGCAGATCTTGAAGAACTGCAAGAGTTGGGATCTGGGACATTTGGCACAGTTTTTCATGGAAAATGGAGGGGAACAGATGTTGCTATTAAGAGAATAAAAAAGAGTTGCTTCTCAGGCAGTTTCTCAGAGCAAGAACGACTGACTAGAGATTTCTGGAGAGAAGCAAGGATTCTATCGACTCTTCACCATCCAAACGTTTTGGCCTTTTATGGGGTGGTTCCTGATGGACCTGATGGAACATTGGCAACTGTAACCGAGTATATGGTAAACGGTTCGTTAAGGCATGTACTTTTAAGGAAGGATAGAGTGCTTGATCGTCGGAAAAGGCTTATAATTGCAATGGATGCGGCTTTTGGCATGGAATATTTGCATTTGAAAAATATTGTTCATTTTGATCTGAAATGTGATAATTTGTTAGTCAACTTGAGGGATCCTGAACGACCTATATGCAAGGTTGGAGATTTTGGGTTGTCAAGAATTAAACGCAACACACTTGTTTCCGGAGGCGTACGTGGAACTCTTCCATGGATGGCACCAGAATTGTTAGATAGCAGCAGTTCTAAGGTCTCTGAGAAGGTTGATGTTTTCTCATTCGGTATTGCAATGTGGGAGATTTTGACAGGCGAGGAGCCATATGCTAATATGCATTGTGGTGCCATCATCGGTGGAATTGTAAGTAATACTCTTAGACCGCCGATCCCGAAACGATGCGATCCTGAATGGAAAAAGCTAATGGAAGAGTGTTGGTCTCCTGAACCTGCAGCAAGGCCATCATTCACAGAGATAACAAATAGACTTCGCAGCATGTCGGTAGCGCTTCAAATCAAAAAGAGGCCAAATGTAATACTTGTGTAG 3498 41.54 MAREVQGILSQQLYMERPRVVSDVRITADHSVSDVCVQTGEVFSPQFMRDRVALRRLSDMSDGDQQQQQQKRIGLGFNQSNQLVYEDLSGILGLKRMNSESSSELSSTPITVYAAERDNTVYPNNASKCQWEDSATGQASGAYADEINRGVQFGPMTSTLYALDSPRSCYPCGAVFGDFSANDKMKFLCSFGGRILPRPNDGKLRYVGGETRIVSIRKNISCEELTKKTYAVCKYAHTIKYQLPGEDLDSLISVCSDEDLHHMIEEYHELENAEGSQRLRIFLISSNDCCESPPSIEGRVVQPIDVDYQYVAAVNGMLDPSLQRSSSGQSFTSQTSQVGAISDHSTNFHTDSSHATDSKEANSPMPNLAGMFPRPGGQLLNHIQVPLKSFNQSPLISPVTVMQKDFKNVDATYIEDARNFTPFVSGKHPCDMVYYVDAAGYHNHLYHGSPLMNYHHEKSTAETDETYKVLNVHFPRSSSENFVPAPNWGLSDTHPMKTMLKERAVNYEQLCSDAEYLIQLRSGTTHMGQRIMHSHSEPLLLEQDKKSNHVGLYPLNSFNDSDQSPSLAMSSSLQDLPTMWKQRVDMEFQDAKYENHRVLASGSDNETYEECNFDEKNANFNGSIYVPSLNDEEKYRNLQHVDYKQNGCLPKEVQSLAGRSSSERRLQLENSADTTGGPSIISHLERTAPKIFEESQYSTKDRQATCDIVRSQPFSCTSSDLLPHTTLALSDKRIINQEPTWNSSASGREVSLGDENFVTCHYRKVAAHSRKKSNCDDAIFIKSSHSDDSRGNEDGELAVIVEDVTHSMPPDIPLASGVVPRVENEASDECPSSRGNDALSSSSETDNEDADSILSSRDESMSEATIAEIEAGIYGLQIIKDADLEELQELGSGTFGTVFHGKWRGTDVAIKRIKKSCFSGSFSEQERLTRDFWREARILSTLHHPNVLAFYGVVPDGPDGTLATVTEYMVNGSLRHVLLRKDRVLDRRKRLIIAMDAAFGMEYLHLKNIVHFDLKCDNLLVNLRDPERPICKVGDFGLSRIKRNTLVSGGVRGTLPWMAPELLDSSSSKVSEKVDVFSFGIAMWEILTGEEPYANMHCGAIIGGIVSNTLRPPIPKRCDPEWKKLMEECWSPEPAARPSFTEITNRLRSMSVALQIKKRPNVILV 1165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3346886 3352671 - CcPI632755_05g004070.1 Cco05g0407 178035

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0407 1165 SUPERFAMILY CAD & PB1 domains 200 288 - -
Cco05g0407 1165 MobiDBLite consensus disorder prediction 659 681 - -
Cco05g0407 1165 Gene3D Phosphorylase Kinase; domain 1 877 971 - -
Cco05g0407 1165 ProSitePatterns Protein kinases ATP-binding region signature. 890 915 IPR017441 GO:0005524(InterPro)
Cco05g0407 1165 SMART PB1_new 199 286 IPR000270 GO:0005515(InterPro)
Cco05g0407 1165 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1009 1021 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco05g0407 1165 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 972 1162 - -
Cco05g0407 1165 CDD PB1_UP2 188 284 - -
Cco05g0407 1165 MobiDBLite consensus disorder prediction 829 849 - -
Cco05g0407 1165 Gene3D - 203 287 - -
Cco05g0407 1165 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 204 286 - -
Cco05g0407 1165 PANTHER SERINE-THREONINE PROTEIN KINASE 150 1151 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Cco05g0407 1165 SUPERFAMILY Protein kinase-like (PK-like) 875 1146 IPR011009 -
Cco05g0407 1165 ProSiteProfiles Protein kinase domain profile. 884 1154 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco05g0407 1165 MobiDBLite consensus disorder prediction 809 861 - -
Cco05g0407 1165 CDD STKc_MAP3K-like 890 1147 - -
Cco05g0407 1165 PRINTS Tyrosine kinase catalytic domain signature 1074 1096 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco05g0407 1165 PRINTS Tyrosine kinase catalytic domain signature 966 979 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco05g0407 1165 PRINTS Tyrosine kinase catalytic domain signature 1003 1021 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco05g0407 1165 PRINTS Tyrosine kinase catalytic domain signature 1118 1140 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco05g0407 1165 Pfam Protein tyrosine and serine/threonine kinase 886 1147 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco05g0407 1165 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 877 971 - -
Cco05g0407 1165 Gene3D Transferase(Phosphotransferase) domain 1 972 1162 - -
Cco05g0407 1165 Pfam PB1 domain 200 283 IPR000270 GO:0005515(InterPro)
Cco05g0407 1165 SMART serkin_6 884 1153 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco05g0407 1165 MobiDBLite consensus disorder prediction 323 362 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0407 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1999 Cco-Chr2:32951224 Cco05g0407 Cco-Chr5:3346886 9.40E-166 dispersed
Cco05g0407 Cco-Chr5:3346886 Cco11g1297 Cco-Chr11:25531318 6.30E-143 dispersed
Cco05g0407 Cco-Chr5:3346886 Cco03g0422 Cco-Chr3:4527491 1.40E-161 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g850 . . . . . Bpe14g01297 . . . . Cma06g01264 Cma14g01874 Car06g01086 Car14g01677 . Cpe08g00383 Cpe03g01573 . . . . . . . . . . . . . . . . . Cone4ag0386 . . . Cme06g00407 . . . Bda13g00024 . . . . . Cmo06g01273 Cmo14g01923 . . . . . . . . . . . . . Cla05g00369 Cam05g0402 Cec05g0407 Cco05g0407 Clacu05g0397 Cmu05g0382 Cre05g0444 . Csa03g01125 Chy06g00391 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005538 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 3 1 2 2 1 1 2 1 1 1 1 1 2 2 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86816 PF07714 PK_Tyr_Ser-Thr 9.40E-62 CL0016 Cco PK