Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco05g0410 | ATGTGGCACGTGGAGGCCGACGGCCGCACGTGTTACGGCAGTACAGTGGTTAAAAGTTGGAGCGTTAGCGAGGGTAAACTTGGAAATCAAAAGGAATTGGAAGTTGAAGAAATGGCAATGGCGGAATCTGGAGGATTGATTCGTTTGTTTCTTCTCGTGGTGTTCATGTTGTTCGTCGGAACAATTGCCAGAGTTCCCAAAGAGATTCCTGAAATTGAGAATGGAGCAACTGAGAAGTTGCAGAGCTCAAGCAACTCATCAGTGGCAGTGAGGTTGGAAGAGGCTGAGGCTGAGGCTCTCGGTAATAAGCATGCTGTGGACAACCCAGAAGAGATCGCTGCTATGGTTGACATGAGTATCCGCAATGCCACTGCAAGGAGGGAGCTTGGCTTCTTCTCTTGTGGAACCGGCAATCCTGTTGATGACTGCTGGCGTTGCGACCCCAATTGGCAACAAAACCGCAAACGTCTGGCAGATTGTGGCATTGGCTTTGGCCGGAATGCCATAGGTGGTCGTGATGGTCGATTCTATGTCGTCACTGACTCCGGCGACGATGACCCTGTAAACCCAAAGCCTGGCACTTTGCGACATGCCGTTATCCAGGATGAACCTCTCTGGATTGTGTTCAAGAGAGACATGGTGATTCAGCTGAAACAAGAGCTGATTATGAACAGTTTCAAGACAATTGATGCCCGTGGGACCAATGTTCACATTGCTAATGGTGCTTGCATAACAATCCAGTTTGTGACCAATGTCATTGTCCATGGTCTAAACATCCATGACTGCAAACCCACTGGAAACGCCATGGTAAGGAGCTCACCCAATCACGTTGGGTGGAGAACAATGGCTGATGGTGATGCCATTTCCATTTTTGGATCAAGTCATATTTGGATCGATCACAATTCACTCTCTAATTGTGCTGACGGCCTCGTTGATGCTGTCATGGGATCCACTGCAATTACCATCACCAACAATTACTTCACCCACCACAATGAGGTTATGTTATTGGGACATAGTGATTCTTACGTTAGAGATAAACAAATGCAAGTGACCATCGCTTACAATCACTTTGGAGAAGGACTCATCCAAAGAATGCCAAGGTGTAGACACGGATACTTCCATGTGGTGAACAATGATTATACTCACTGGGAGATGTACGCCATTGGTGGAAGTGCAAATCCAACCATCAATAGCCAGGGTAACAGATATGCTGCTCCAACCAACCCTTTTGCTAAAGAGGTGACAAAGAGAGTTGAAACAGCTGAAACTGAATGGAAAAATTGGAATTGGAGATCAGAGGGAGACCTATTGTTGAATGGTGCCTTTTTCACTCCATCTGGTGCAGGGGCCTCAGCAAGCTATGCTAGAGCCTCAAGCTTGGGAGCTAAATCTTCGTCTATGGTTGGTACTATAACATCCAACGCCGGTGCACTTTCCTGCCGGAGAGGCCATCCATGCTAG | 1461 | 47.36 | MWHVEADGRTCYGSTVVKSWSVSEGKLGNQKELEVEEMAMAESGGLIRLFLLVVFMLFVGTIARVPKEIPEIENGATEKLQSSSNSSVAVRLEEAEAEALGNKHAVDNPEEIAAMVDMSIRNATARRELGFFSCGTGNPVDDCWRCDPNWQQNRKRLADCGIGFGRNAIGGRDGRFYVVTDSGDDDPVNPKPGTLRHAVIQDEPLWIVFKRDMVIQLKQELIMNSFKTIDARGTNVHIANGACITIQFVTNVIVHGLNIHDCKPTGNAMVRSSPNHVGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLVDAVMGSTAITITNNYFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYAAPTNPFAKEVTKRVETAETEWKNWNWRSEGDLLLNGAFFTPSGAGASASYARASSLGAKSSSMVGTITSNAGALSCRRGHPC | 486 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 3388023 | 3393050 | + | CcPI632755_05g004100.1 | Cco05g0410 | 178038 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco05g0410 | 486 | SMART | amb_all | 212 | 409 | IPR002022 | - | |
| Cco05g0410 | 486 | Pfam | Pectate lyase | 223 | 401 | IPR002022 | - | |
| Cco05g0410 | 486 | PRINTS | Pollen allergen Amb family signature | 220 | 236 | IPR018082 | - | |
| Cco05g0410 | 486 | PRINTS | Pollen allergen Amb family signature | 457 | 480 | IPR018082 | - | |
| Cco05g0410 | 486 | PRINTS | Pollen allergen Amb family signature | 364 | 383 | IPR018082 | - | |
| Cco05g0410 | 486 | PRINTS | Pollen allergen Amb family signature | 184 | 209 | IPR018082 | - | |
| Cco05g0410 | 486 | PRINTS | Pollen allergen Amb family signature | 428 | 452 | IPR018082 | - | |
| Cco05g0410 | 486 | PRINTS | Pollen allergen Amb family signature | 284 | 305 | IPR018082 | - | |
| Cco05g0410 | 486 | PRINTS | Pollen allergen Amb family signature | 386 | 405 | IPR018082 | - | |
| Cco05g0410 | 486 | PRINTS | Pollen allergen Amb family signature | 160 | 177 | IPR018082 | - | |
| Cco05g0410 | 486 | SUPERFAMILY | Pectin lyase-like | 114 | 481 | IPR011050 | - | |
| Cco05g0410 | 486 | FunFam | Pectate lyase | 137 | 479 | - | - | |
| Cco05g0410 | 486 | Gene3D | - | 137 | 479 | IPR012334 | - | |
| Cco05g0410 | 486 | PANTHER | PECTATE LYASE 18-RELATED | 59 | 483 | IPR045032 | GO:0030570(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco05g0410 | Cco-Chr5:3388023 | Cco05g2392 | Cco-Chr5:32401227 | 3.70E-153 | dispersed | |
| Cco03g0337 | Cco-Chr3:3728773 | Cco05g0410 | Cco-Chr5:3388023 | 4.00E-177 | transposed | |
| Cco08g1926 | Cco-Chr8:30201351 | Cco05g0410 | Cco-Chr5:3388023 | 3.30E-173 | transposed | |
| Cco09g2155 | Cco-Chr9:35942371 | Cco05g0410 | Cco-Chr5:3388023 | 3.10E-169 | transposed | |
| Cco05g0410 | Cco-Chr5:3388023 | Cco06g0822 | Cco-Chr6:9849896 | 4.60E-212 | wgd | |
| Cco05g0410 | Cco-Chr5:3388023 | Cco07g0166 | Cco-Chr7:1788127 | 1.00E-203 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco05g0410 | K01728 | - | csv:101218188 | 852.432 |