Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0417 ATGGAAGGATTGGTGGTTCGCTCGCCGTTCGTTTCAACAGGGAAGAAGCTTCCCTTCTCGCCTTTGCTTGACTCTTTGCCCAGTTGTTCTGCTTCTGGCAGTGCATTTTCTAAGACCGTATTAACATCGCTGAAACATAGAAGAGTGACGAGATTGAACGGGACGTGTGGTAAAATCAGAGCACATTCTTCCAATGTAAGTATCGGACCCGATGGATACAAGCACGAGGAGGAAAAGGAGGGCCAGCATGTTGTTTCCAGTAGTGCACCTGTTGATATCAATTCATCTAAAACTGAGAAATCTCCAAATGGATTGCCTTACCCTCTTTCTATTGCGCTAGTACTAATTGGATGTGGTTTAGTATTCTCGCTGATTGCCTTTGTGAAGGGAGGACCTTCATCAATCTTGGCTGCAGTTGCAAAGTCAGGGTTCACTGCTGCCTTCTCATTAATATTTGTCTCTGAAATTGGAGACAAGACGTTTTTCATTGCTGCACTCTTGGCCATGCAATATAAGAAAGGACTGGTTCTGTTAGGATCTATGGGAGCACTTTCACTCATGACAGTCCTCTCAGTTATAATTGGACGGATATTTCACTCAGTACCTGCTCAGTTCCAGACAACTTTACCAATCGGAGAATATGCAGCAGTAACTCTTCTATTGTTCTTTGGTCTCAAGTCCATTAAAGATGCATGGGATCTTCCCTCGAGTGTTCCTAAACAAGGTGATGAGAGTGGCCCAGAACTTGATGAATATGTCGAAGCAGAGGAGCTTGTTAAAGAAAAGGTTTCAAAACGGCTCTCCAATCCACTTGAAATCATTTGGAAGTCGTTCAGCCTTATATTTTTCGCCGAATGGGGTGATCGCTCAATGCTTGCAACCATTGCTCTTGGAGCTGCGCAGTCTCCATGGGGTGTGGCGACGGGAGCTATCACTGGACACCTAATTGCAACTACCATTGCCATTCTAGGAGGAGCACTACTTGCCAACTACATTTCTGAAAAACTGGTTGGCTACTTGGGCGGTGTACTCTTCTTAATTTTTGCAATAGCAACATTTTTTGGAGTTTTCTGA 1074 44.32 MEGLVVRSPFVSTGKKLPFSPLLDSLPSCSASGSAFSKTVLTSLKHRRVTRLNGTCGKIRAHSSNVSIGPDGYKHEEEKEGQHVVSSSAPVDINSSKTEKSPNGLPYPLSIALVLIGCGLVFSLIAFVKGGPSSILAAVAKSGFTAAFSLIFVSEIGDKTFFIAALLAMQYKKGLVLLGSMGALSLMTVLSVIIGRIFHSVPAQFQTTLPIGEYAAVTLLLFFGLKSIKDAWDLPSSVPKQGDESGPELDEYVEAEELVKEKVSKRLSNPLEIIWKSFSLIFFAEWGDRSMLATIALGAAQSPWGVATGAITGHLIATTIAILGGALLANYISEKLVGYLGGVLFLIFAIATFFGVF 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3460264 3463945 + CcPI632755_05g004170.1 Cco05g0417 178045

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0417 357 PANTHER TRANSMEMBRANE PROTEIN HTP-1 RELATED 121 354 IPR001727 GO:0005384(PANTHER)|GO:0005794(PANTHER)|GO:0009507(PANTHER)|GO:0015085(PANTHER)|GO:0032468(PANTHER)|GO:0032472(PANTHER)|GO:0046873(PANTHER)|GO:0046873(InterPro)|GO:0070588(PANTHER)|GO:0071421(PANTHER)
Cco05g0417 357 Pfam Uncharacterized protein family UPF0016 146 224 IPR001727 GO:0046873(InterPro)
Cco05g0417 357 Pfam Uncharacterized protein family UPF0016 275 349 IPR001727 GO:0046873(InterPro)
Cco05g0417 357 ProSitePatterns Uncharacterized protein family UPF0016 signature. 155 164 IPR049555 -
Cco05g0417 357 MobiDBLite consensus disorder prediction 87 102 - -
Cco05g0417 357 MobiDBLite consensus disorder prediction 67 102 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0417 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0211 Cco-Chr1:2063020 Cco05g0417 Cco-Chr5:3460264 1.80E-38 dispersed
Cco05g0417 Cco-Chr5:3460264 Cco11g1104 Cco-Chr11:21317535 3.10E-32 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g837 . . . . . . . . . . Cma06g01271 . Car06g01092 . . Cpe08g00377 . Bhi01g00013 . . . . . . . . . . . . . . . . Cone4ag0380 Lsi05g01803 . . Cme06g00417 . Blo07g00293 Bda11g00656 . . . . Bma06g01304 . Cmo06g01279 . . . . . . . . . . . . . . Cla05g00379 Cam05g0412 Cec05g0417 Cco05g0417 Clacu05g0408 Cmu05g0391 Cre05g0453 . Csa03g01136 Chy06g00402 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010246 1 2 1 0 0 1 1 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 32