Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0429 ATGGAAGAAGAAGTGAAGGTCCATGGAAGTTGGGCAAGTCCTTTCAGCTACAGAGTGATATGGGCTCTGCAACTCAAACGCATACCCTACCGTTTCATTCAAGAAGACATGGCCAACAAAACCCCTTTGCTCCTTCATTACAATCCCGTCCACAAGAAGATTCCGGTGCTCGTCCATGCCGGAAACCCTATCTGCGAATCCGCCGTCATCCTCGAGTACATCGACGACACTTGGCCGGAAAAACCTCTGCTACCGTCCGATCCTTTCCACAGAGCCACCGCTCGCTTCTGGATCAAATTCATTGAGGATAAGGAAGCGACTATTAGGAGGATTTTTACGGCGGGAGAGGAAGAGAGAGAGGAGGCGAGGAAAGAAACCCTAGAAGTGCTGAGGACGATCGAGGAGCGGGGCCTCGGCAACGGGAAATTCTTCGGAGGAGAGGAGATTAATATGATTGATTTGGTGTATGGATGGATCGCAGTGTGGATGAAGGTTTTTGAAGAAGTTCTGGACATGAAACTTATGGAAGGACTTGAGTTCCCTCGCCTCCATGCTTGGGCGGAGAACTTCAAAGCCGCCGCCGTTATCAGAGATCATATTCCCGATCACCATCAAATGGTCCTCCATCTCCGCCGCCGCCGAGAGGAACTGCCTCAATCTCCCCCAAACTAG 672 51.04 MEEEVKVHGSWASPFSYRVIWALQLKRIPYRFIQEDMANKTPLLLHYNPVHKKIPVLVHAGNPICESAVILEYIDDTWPEKPLLPSDPFHRATARFWIKFIEDKEATIRRIFTAGEEEREEARKETLEVLRTIEERGLGNGKFFGGEEINMIDLVYGWIAVWMKVFEEVLDMKLMEGLEFPRLHAWAENFKAAAVIRDHIPDHHQMVLHLRRRREELPQSPPN 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3505581 3506331 + CcPI632755_05g004290.1 Cco05g0429 178057

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0429 223 CDD GST_C_Tau 88 213 IPR045074 GO:0004364(InterPro)|GO:0006749(InterPro)
Cco05g0429 223 Pfam Glutathione S-transferase, N-terminal domain 12 76 IPR004045 -
Cco05g0429 223 Pfam Glutathione S-transferase, C-terminal domain 117 188 - -
Cco05g0429 223 SUPERFAMILY Thioredoxin-like 5 103 IPR036249 -
Cco05g0429 223 FunFam Tau class glutathione S-transferase 1 86 - -
Cco05g0429 223 SFLD Main.3: Omega- and Tau-like 1 218 IPR045073 -
Cco05g0429 223 Gene3D Glutaredoxin 1 86 - -
Cco05g0429 223 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 3 82 IPR004045 -
Cco05g0429 223 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 87 222 IPR010987 -
Cco05g0429 223 Gene3D - 87 220 - -
Cco05g0429 223 SFLD Glutathione Transferase (cytosolic) 1 218 IPR040079 -
Cco05g0429 223 CDD GST_N_Tau 5 78 - -
Cco05g0429 223 FunFam Tau class glutathione S-transferase 84 220 - -
Cco05g0429 223 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 4 211 IPR045073 GO:0004364(PANTHER)|GO:0005737(PANTHER)|GO:0006749(PANTHER)
Cco05g0429 223 SUPERFAMILY GST C-terminal domain-like 76 215 IPR036282 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0429 K00799 - - csv:101207634 297.745
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0426 Cco-Chr5:3499508 Cco05g0429 Cco-Chr5:3505581 8.10E-79 dispersed
Cco05g0429 Cco-Chr5:3505581 Cco06g1642 Cco-Chr6:27029622 4.00E-46 dispersed
Cco05g0427 Cco-Chr5:3502359 Cco05g0429 Cco-Chr5:3505581 5.00E-89 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g820 . . . . . . . . . . Cma06g01277 . Car06g01098 Car14g01667 . . Cpe03g01559 . . . . . . . . . . . . . . . . . . Lsi05g01793 . . Cme06g00430 . . . . . . . . . . Cmo14g01906 . . . . . . . . . . . . . Cla05g00390 Cam05g0423 Cec05g0428 Cco05g0429 Clacu05g0419 Cmu05g0401 Cre05g0464 . Csa03g01145 Chy06g00409 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000433 1 5 2 3 1 5 3 5 5 4 2 4 4 7 7 4 4 1 5 4 3 3 3 5 6 6 2 5 5 6 120