Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0432 ATGGTTTCTCGAATGAACGACAATGCCGGGCCAAGCAGAGCTCACCTTTTTCCATCTACATTCGGCGTTTCGCTTGGGATTCGCTACCTCGACCTTGGATCTGTGGCTGATCGAATTTCCCCCTCAATGGCTGGTCAAGTAAATCTAGTGGTTGGATCTCTTGTTTGGATTGAGGATCCTGAGGTAGCCTGGCTAGATGGGGAAGTCTTGGAAGTTAATGGTCAAGATATCAAAGTACTTTGTACAACAGGAACTACTGTTGAGGTCAAATCATCAAATGTCTATCCGAAGGATCCTGAATTTCCGCCATGTGGTGTGGATGATATGACCAAACTAGCTTATTTGCATGAGCCGGGGCTTCTACAAAATTTAAAATCTCGTTACGATGTTAATGAAATTTATACATATACTGGAAGTATACTAATAGCCGTAAATCCTTTTCGAAGACTTCCTCATTTATATGATAATCACATGATGCAACAATATAAAGGTGCAGCTTTAGGTGAGCTGAGCCCGCATCCCTTTGCCATTGCAAATTCTGCTTATAGACAGATGATTAGTGAAAGTATCAGCCAGTCAATTTTAGTTAGTGGGGAAAGTGGTGCTGGCAAAACGGAGAGTACAAAGATGCTCATGCGCTATCTTGCCCACGTCGGAGGGAGAGCTGGAGGGAAGGCTGCAACTGGTGAACGTTCTGTAGAGCAGCAAGTACTAGAGTCCAACCCTGTTCTAGAAGCATTTGGCAATGCAAAGACTGTTAGAAACAATAATTCAAGCCGGTTTGGTAAATTTGTGGAGATCCAATTTGATCAGAGTTGGAGAATTTCTGGAGCCGCTATTAGAACTTATTTATTAGAACGTTCCCGTGTTTGCCAAGTGTCTGATCCTGAGAGGAATTATCATTGCTTCTATATGCTTTGTGCTGCACCAACAGAGGAAATTGAAAAGTATAAATTAGGGAATCCAAGAACATTTCATTACCTTAATCAATCTAATTGCTGCGAACTTGATGGAGTGGATGATTCCAAGGAATATCTTTCTACCAGGAAAGCCATGGATGTTGTTGGAATAAGTACAACTGAGCAGGATGCAATATTTCGAGTGGTAGCTGCGGTACTTCATTTGGGCAACGTTGAATTTGCGAAGGGGAAGGATGCAGATTCCTCTGAACCGAAGGATGACAAAGCTCGGTTCCATCTCAAAATGGCAGCCGAACTATTCATGTGTGATGAGAAGGCTCTTGAAGATTCAATGTGTACTCGTGTGATAGTTACACGTGATGAAACCATAACTAAATGTCTTGATCCGGACTCTGCATCTCTTAGTAGGGATGCTTTAGCAAAGATTGTTTATTCAAGATTATTTGATTGGATTGTTGATAAGATTAATAACTCAATTGGCCAAGATCCTCATTCAAAGAACTTAATTGGGGTTCTGGATATCTATGGATTCGAGAGTTTCAAGACAAACAGCTTTGAGCAATTCTGTATTAACCTGACCAATGAGAAATTGCAGCAACATTTCAACCAGCATGTGTTCAAGATGGAGCAAGAAGAATATACAAAAGAAGAAATTGACTGGAGTTATATTGAATTTATTGATAATCAGGATGTTCTTGATCTCATTGAGAAGAAACCTGGTGGCGTCATTGCTCTTCTGGATGAGGCTTGCATGTTTCCGAGATCCACACATGACACTTTTGCGCAGAAACTATATCAAACCTTTAAGGACCATAAGCGTTTTAGTAAGCCGAAATTGTCACGAACTGACTTCACAATTTGTCATTATGCTGGTGATGTTACGTACCAAACTGAACTCTTCTTGGACAAAAACAAAGATTATGTTGTTGCAGAGCATCAAGCACTGTTGAGTGCTTCTAAGTGCCCCTTTGTTTCGGGGCTTTTCCCCCCCTTACCTGAAGAAACCTCCAAATCATCCAAGTTCTCATCAATAGGGACTCGATTTAAGCAACAACTTCAATCTTTGCTTGAGACACTAAATGCTACTGAGCCACACTACATACGCTGTGTAAAGCCAAACAATCTTCTTAAACCAGCCATCTTTGAGAACAATAATGTTTTACAGCAGCTCCGATGTGGGGGAGTCATGGAAGCAATCAGGATCAGTTGTGCTGGATATCCCACTAGGAAGACATTTGATGAATTTATTGGTCGGTTTACTATCTTGGCACCTGATGTTTTGAAGGGGAGCTCTAATGAAGCCACTGCATGTAAGAGGCTTTTGGAGAAAGTGAACCTTAAAGGGTATCAGATTGGTAAAACCAAAGTGTTTCTCAGGGCTGGTCAAATGGCAGAATTAGATGCTTGCCGAACTGAGGTTTTGGGAAGATCTGCTATTGTTATCCAAAGGAAAGTTCGCTCATATTTGGGGCGCAAAAACTTTATTTTGTTGCGGTTGGCTGCTATTCAAATTCAAGCCCTGTGTAGAGGGCAAGTTGCACGCCAGCATTATGAAGACATCAGAAAGGAAGCTGCTTCTATCAAAATCCAAAAGTATTGGCGTATGCATTTTGACCGATGTTGCTATAAAAGATTGTGCTCTTCAGCTGTAGCTATTCAAGCTGGTATCCACGGTATGATTGCCCGTAACGAGCTTGAGTTCAGGAGGCAGACAAGAGCTGCTATTATCATTCAGAGTCGATGTCGGCAATACTTGGCCCGCATGCATTATTTGAGGATAAAAAAAGCTGCAATTACTACTCAATGTGCTTGGAGAGGAAGAGTTGCACGCAAAGAACTTCGAAAGCTTAAAATGGCTGCTAAGGAAACAGGCGCTCTCCAAGCTGCCAAAAATCTGCTGGAGAAGCAAGTGGAAGAACTAACATGGAGATTGCAGCTAGAGAAACGAATGCGGGCTGACATGGAGGAAGCCAAGACTAAAGAAAACACAAAATTGAAGGCTGATTTGGAAGAAATGAGAACTCAATTTCAGGAAACGAAAGCACTGCTTAATGAGGAACGTGAAGCTGCAATGAAAGTAGTTGAGCAAGTTCCAGTCATACAGGAGGTTCCCGTTGTTGATCATGAGCTGATCAATAAGTTAACTACTGAAAATGAACAACTTAAGGCTCTTGTAAGTACTTTGGAAAATAAAATTGATGAAACAGAAAGGAAATTTGAGGAAATTAACAGACTTAGTGAAGAGCGGCTGAAGCAGGCTACGGAGGCAGAGTCAAAGATAATTGAATTAAAGACTGCCATGCAAAGGCTTGAGGAAAAATTATCTGACTTGGAAACTGAGGACCAAATTCTGAGGCAGCAAACACTGCTAAAGCCTCCTTCAAGAAAGATGTCTGGACGCATAGCAATGCAGCCTTTGGAAAATGGCCACCATGAATTACTAAGCAACGCTCCATCGAAAAAGTATGGTACTGATGCTGATGCAAAATTGAGGAGATCCCAAATTGAAAGGCAGAATGAAGGCATGGATGCTCTGTCAAAATACCTGACACAGGATCTTGGGTACAGTGAGGGAAAACCTGTTGCTGCTTTTGTAATTTATAAATCTTTTCTCCATTGGAGATCATTTGAAGCAGAAAAAACAAGTGTTTTTGATCGGCTTATTCAGCTGATTGGTTCTGCAATCGAGAATCAGGATGATAATGATCTTATGACCTATTGGTTATCCAACACAACTACATTGTTGTTCCTTCTTCAAAAGAGTTTAAAAACCACACCACGGAAGCCTCCCACCCCTACATCATTTTTTGAGCGGATGACCCAAGGTTTTCGGTCATCTTCTGCCCTTCCAGTTGGCACCCTTGATGTGGTGCGGCAAGTGGAAGCCAAATATCCTGCCCTACTTTTCAAGCAGCAGCTAACCGCGTATGTAGAAAAGATATATGGAATAGTTAGAGACAACCTAAAGAAGGAACTATCGCCATTGATTTCAACTTGTATTCAGGCTCCCAGATCTTCGAGAGGAAATATTTTGAAATCATCTGGCCAGGAAAATAGTAGTAGCCCTTCCAGTAATTCATGGAGCAGCATCATTGATAACCTTAATGATCATCTCTGTAGATTGCAAAAGAACTTTGTGCCTAACGTTTTGGTTCAGAAGATATTCACTCAGGTTTTTTCATATATCAACGTTCAACTTTTTAACAGTCTTCTACTTCGTCGAGAGTGCTGTACGTTTAGCAATGGGGAATATGTGAAGTCAGGATTGGCTGAGTTAGAGATTTGGTGTGGCCAAGCACAAGAAGAGTATGCTGGGTCATCTTGGGATGAGCTAAAACCGGTGAGGCAAGCTGTTGGATTCTTGGTTATTCACCAGAAGTCTAGAATATCTTATGATGAAATTACAAATGATCTCTGTCCAATATTGAGCGTTCAACAGCTTTATAGAATATGTACTCTTTATTGGGACGACAATTACAATACCAGGAGTGTAGCTCCAGATGTTATTTCTAGCATGAAGGTTTTGATGACTGAGGATTCCAATGATGAAGATAGTAGTTCCTTTTTGTTGGATGACAATTCCAGGACATACAACCTTGGTAAGAGCGACGTTTTGCAGAATCTTCCTCTATGGTTGGGTCGATATGTTGAGCCAGGCAAGTGGAATGGAATTTGTTTCGTAATTCCTCCCCGCCCTGAAGCTGCTGATTACTGGGGTCTCAAGTCCGGAAGGAGGTGGCATACAAGGCTTGTTGAAATGGTTAAAATTCATTGA 4695 41.45 MVSRMNDNAGPSRAHLFPSTFGVSLGIRYLDLGSVADRISPSMAGQVNLVVGSLVWIEDPEVAWLDGEVLEVNGQDIKVLCTTGTTVEVKSSNVYPKDPEFPPCGVDDMTKLAYLHEPGLLQNLKSRYDVNEIYTYTGSILIAVNPFRRLPHLYDNHMMQQYKGAALGELSPHPFAIANSAYRQMISESISQSILVSGESGAGKTESTKMLMRYLAHVGGRAGGKAATGERSVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDQSWRISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCAAPTEEIEKYKLGNPRTFHYLNQSNCCELDGVDDSKEYLSTRKAMDVVGISTTEQDAIFRVVAAVLHLGNVEFAKGKDADSSEPKDDKARFHLKMAAELFMCDEKALEDSMCTRVIVTRDETITKCLDPDSASLSRDALAKIVYSRLFDWIVDKINNSIGQDPHSKNLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIEFIDNQDVLDLIEKKPGGVIALLDEACMFPRSTHDTFAQKLYQTFKDHKRFSKPKLSRTDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCPFVSGLFPPLPEETSKSSKFSSIGTRFKQQLQSLLETLNATEPHYIRCVKPNNLLKPAIFENNNVLQQLRCGGVMEAIRISCAGYPTRKTFDEFIGRFTILAPDVLKGSSNEATACKRLLEKVNLKGYQIGKTKVFLRAGQMAELDACRTEVLGRSAIVIQRKVRSYLGRKNFILLRLAAIQIQALCRGQVARQHYEDIRKEAASIKIQKYWRMHFDRCCYKRLCSSAVAIQAGIHGMIARNELEFRRQTRAAIIIQSRCRQYLARMHYLRIKKAAITTQCAWRGRVARKELRKLKMAAKETGALQAAKNLLEKQVEELTWRLQLEKRMRADMEEAKTKENTKLKADLEEMRTQFQETKALLNEEREAAMKVVEQVPVIQEVPVVDHELINKLTTENEQLKALVSTLENKIDETERKFEEINRLSEERLKQATEAESKIIELKTAMQRLEEKLSDLETEDQILRQQTLLKPPSRKMSGRIAMQPLENGHHELLSNAPSKKYGTDADAKLRRSQIERQNEGMDALSKYLTQDLGYSEGKPVAAFVIYKSFLHWRSFEAEKTSVFDRLIQLIGSAIENQDDNDLMTYWLSNTTTLLFLLQKSLKTTPRKPPTPTSFFERMTQGFRSSSALPVGTLDVVRQVEAKYPALLFKQQLTAYVEKIYGIVRDNLKKELSPLISTCIQAPRSSRGNILKSSGQENSSSPSSNSWSSIIDNLNDHLCRLQKNFVPNVLVQKIFTQVFSYINVQLFNSLLLRRECCTFSNGEYVKSGLAELEIWCGQAQEEYAGSSWDELKPVRQAVGFLVIHQKSRISYDEITNDLCPILSVQQLYRICTLYWDDNYNTRSVAPDVISSMKVLMTEDSNDEDSSSFLLDDNSRTYNLGKSDVLQNLPLWLGRYVEPGKWNGICFVIPPRPEAADYWGLKSGRRWHTRLVEMVKIH 1564
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
5 3531561 3559328 - CcPI632755_05g004320.1 Cco05g0432 178060
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0432 1564 FunFam Class V myosin 485 627 - -
Cco05g0432 1564 Gene3D - 713 776 - -
Cco05g0432 1564 Coils Coil 1018 1055 - -
Cco05g0432 1564 ProSiteProfiles Dilute domain profile. 1192 1485 IPR002710 -
Cco05g0432 1564 CDD MYSc_Myo11 118 766 IPR036018 -
Cco05g0432 1564 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 50 99 IPR004009 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Cco05g0432 1564 Gene3D - 831 879 - -
Cco05g0432 1564 Gene3D - 781 830 - -
Cco05g0432 1564 Gene3D - 880 928 - -
Cco05g0432 1564 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 831 929 IPR027417 -
Cco05g0432 1564 Pfam DIL domain 1360 1465 IPR002710 -
Cco05g0432 1564 Gene3D - 298 356 - -
Cco05g0432 1564 Coils Coil 1060 1094 - -
Cco05g0432 1564 ProSiteProfiles Myosin motor domain profile. 104 778 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Cco05g0432 1564 FunFam Myosin heavy chain 298 353 - -
Cco05g0432 1564 Gene3D - 485 669 - -
Cco05g0432 1564 SMART iq_5 851 873 IPR000048 GO:0005515(InterPro)
Cco05g0432 1564 SMART iq_5 780 802 IPR000048 GO:0005515(InterPro)
Cco05g0432 1564 SMART iq_5 876 898 IPR000048 GO:0005515(InterPro)
Cco05g0432 1564 SMART iq_5 899 921 IPR000048 GO:0005515(InterPro)
Cco05g0432 1564 SMART iq_5 828 850 IPR000048 GO:0005515(InterPro)
Cco05g0432 1564 SMART iq_5 803 825 IPR000048 GO:0005515(InterPro)
Cco05g0432 1564 SMART MYSc_2a 98 779 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Cco05g0432 1564 ProSiteProfiles IQ motif profile. 804 833 - -
Cco05g0432 1564 ProSiteProfiles IQ motif profile. 900 929 - -
Cco05g0432 1564 Pfam Myosin head (motor domain) 106 766 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Cco05g0432 1564 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 75 831 IPR027417 -
Cco05g0432 1564 PANTHER MYOSIN 55 1484 - GO:0000146(PANTHER)|GO:0005737(PANTHER)|GO:0007015(PANTHER)|GO:0015629(PANTHER)|GO:0030050(PANTHER)|GO:0031982(PANTHER)|GO:0051015(PANTHER)
Cco05g0432 1564 CDD MyosinXI_CBD 1143 1501 IPR037975 GO:0007015(InterPro)
Cco05g0432 1564 SMART DIL_2 1360 1467 IPR002710 -
Cco05g0432 1564 Gene3D Myosin VI head, motor domain, U50 subdomain 358 647 - -
Cco05g0432 1564 ProSiteProfiles IQ motif profile. 854 881 - -
Cco05g0432 1564 FunFam Myosin 2 358 475 - -
Cco05g0432 1564 FunFam Myosin XI D 781 830 - -
Cco05g0432 1564 FunFam unconventional myosin-Va 879 927 - -
Cco05g0432 1564 Coils Coil 937 957 - -
Cco05g0432 1564 PRINTS Myosin heavy chain signature 134 153 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Cco05g0432 1564 PRINTS Myosin heavy chain signature 242 269 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Cco05g0432 1564 PRINTS Myosin heavy chain signature 191 216 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Cco05g0432 1564 PRINTS Myosin heavy chain signature 528 556 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Cco05g0432 1564 PRINTS Myosin heavy chain signature 475 503 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Cco05g0432 1564 ProSiteProfiles IQ motif profile. 877 906 - -
Cco05g0432 1564 Gene3D Kinesin motor domain 107 708 IPR036961 -
Cco05g0432 1564 ProSiteProfiles IQ motif profile. 829 858 - -
Cco05g0432 1564 Coils Coil 962 996 - -
Cco05g0432 1564 Pfam Myosin N-terminal SH3-like domain 51 94 IPR004009 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Cco05g0432 1564 Pfam IQ calmodulin-binding motif 878 897 IPR000048 GO:0005515(InterPro)
Cco05g0432 1564 Pfam IQ calmodulin-binding motif 807 824 IPR000048 GO:0005515(InterPro)
Cco05g0432 1564 Pfam IQ calmodulin-binding motif 831 850 IPR000048 GO:0005515(InterPro)
Cco05g0432 1564 Pfam IQ calmodulin-binding motif 902 921 IPR000048 GO:0005515(InterPro)
Cco05g0432 1564 Pfam IQ calmodulin-binding motif 783 801 IPR000048 GO:0005515(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1583 Cco-Chr3:30448169 Cco05g0432 Cco-Chr5:3531561 0.00E+00 dispersed
Cco05g0432 Cco-Chr5:3531561 Cco08g1134 Cco-Chr8:23140374 0.00E+00 dispersed
Cco02g1533 Cco-Chr2:27976250 Cco05g0432 Cco-Chr5:3531561 7.40E-163 transposed
Cco09g0345 Cco-Chr9:3058115 Cco05g0432 Cco-Chr5:3531561 0.00E+00 transposed
Cco11g1900 Cco-Chr11:31701923 Cco05g0432 Cco-Chr5:3531561 4.60E-150 transposed
Cco05g0432 Cco-Chr5:3531561 Cco06g0132 Cco-Chr6:1302224 0.00E+00 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0432 K10357 - csv:101221506 2756.09