Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco05g0432 | ATGGTTTCTCGAATGAACGACAATGCCGGGCCAAGCAGAGCTCACCTTTTTCCATCTACATTCGGCGTTTCGCTTGGGATTCGCTACCTCGACCTTGGATCTGTGGCTGATCGAATTTCCCCCTCAATGGCTGGTCAAGTAAATCTAGTGGTTGGATCTCTTGTTTGGATTGAGGATCCTGAGGTAGCCTGGCTAGATGGGGAAGTCTTGGAAGTTAATGGTCAAGATATCAAAGTACTTTGTACAACAGGAACTACTGTTGAGGTCAAATCATCAAATGTCTATCCGAAGGATCCTGAATTTCCGCCATGTGGTGTGGATGATATGACCAAACTAGCTTATTTGCATGAGCCGGGGCTTCTACAAAATTTAAAATCTCGTTACGATGTTAATGAAATTTATACATATACTGGAAGTATACTAATAGCCGTAAATCCTTTTCGAAGACTTCCTCATTTATATGATAATCACATGATGCAACAATATAAAGGTGCAGCTTTAGGTGAGCTGAGCCCGCATCCCTTTGCCATTGCAAATTCTGCTTATAGACAGATGATTAGTGAAAGTATCAGCCAGTCAATTTTAGTTAGTGGGGAAAGTGGTGCTGGCAAAACGGAGAGTACAAAGATGCTCATGCGCTATCTTGCCCACGTCGGAGGGAGAGCTGGAGGGAAGGCTGCAACTGGTGAACGTTCTGTAGAGCAGCAAGTACTAGAGTCCAACCCTGTTCTAGAAGCATTTGGCAATGCAAAGACTGTTAGAAACAATAATTCAAGCCGGTTTGGTAAATTTGTGGAGATCCAATTTGATCAGAGTTGGAGAATTTCTGGAGCCGCTATTAGAACTTATTTATTAGAACGTTCCCGTGTTTGCCAAGTGTCTGATCCTGAGAGGAATTATCATTGCTTCTATATGCTTTGTGCTGCACCAACAGAGGAAATTGAAAAGTATAAATTAGGGAATCCAAGAACATTTCATTACCTTAATCAATCTAATTGCTGCGAACTTGATGGAGTGGATGATTCCAAGGAATATCTTTCTACCAGGAAAGCCATGGATGTTGTTGGAATAAGTACAACTGAGCAGGATGCAATATTTCGAGTGGTAGCTGCGGTACTTCATTTGGGCAACGTTGAATTTGCGAAGGGGAAGGATGCAGATTCCTCTGAACCGAAGGATGACAAAGCTCGGTTCCATCTCAAAATGGCAGCCGAACTATTCATGTGTGATGAGAAGGCTCTTGAAGATTCAATGTGTACTCGTGTGATAGTTACACGTGATGAAACCATAACTAAATGTCTTGATCCGGACTCTGCATCTCTTAGTAGGGATGCTTTAGCAAAGATTGTTTATTCAAGATTATTTGATTGGATTGTTGATAAGATTAATAACTCAATTGGCCAAGATCCTCATTCAAAGAACTTAATTGGGGTTCTGGATATCTATGGATTCGAGAGTTTCAAGACAAACAGCTTTGAGCAATTCTGTATTAACCTGACCAATGAGAAATTGCAGCAACATTTCAACCAGCATGTGTTCAAGATGGAGCAAGAAGAATATACAAAAGAAGAAATTGACTGGAGTTATATTGAATTTATTGATAATCAGGATGTTCTTGATCTCATTGAGAAGAAACCTGGTGGCGTCATTGCTCTTCTGGATGAGGCTTGCATGTTTCCGAGATCCACACATGACACTTTTGCGCAGAAACTATATCAAACCTTTAAGGACCATAAGCGTTTTAGTAAGCCGAAATTGTCACGAACTGACTTCACAATTTGTCATTATGCTGGTGATGTTACGTACCAAACTGAACTCTTCTTGGACAAAAACAAAGATTATGTTGTTGCAGAGCATCAAGCACTGTTGAGTGCTTCTAAGTGCCCCTTTGTTTCGGGGCTTTTCCCCCCCTTACCTGAAGAAACCTCCAAATCATCCAAGTTCTCATCAATAGGGACTCGATTTAAGCAACAACTTCAATCTTTGCTTGAGACACTAAATGCTACTGAGCCACACTACATACGCTGTGTAAAGCCAAACAATCTTCTTAAACCAGCCATCTTTGAGAACAATAATGTTTTACAGCAGCTCCGATGTGGGGGAGTCATGGAAGCAATCAGGATCAGTTGTGCTGGATATCCCACTAGGAAGACATTTGATGAATTTATTGGTCGGTTTACTATCTTGGCACCTGATGTTTTGAAGGGGAGCTCTAATGAAGCCACTGCATGTAAGAGGCTTTTGGAGAAAGTGAACCTTAAAGGGTATCAGATTGGTAAAACCAAAGTGTTTCTCAGGGCTGGTCAAATGGCAGAATTAGATGCTTGCCGAACTGAGGTTTTGGGAAGATCTGCTATTGTTATCCAAAGGAAAGTTCGCTCATATTTGGGGCGCAAAAACTTTATTTTGTTGCGGTTGGCTGCTATTCAAATTCAAGCCCTGTGTAGAGGGCAAGTTGCACGCCAGCATTATGAAGACATCAGAAAGGAAGCTGCTTCTATCAAAATCCAAAAGTATTGGCGTATGCATTTTGACCGATGTTGCTATAAAAGATTGTGCTCTTCAGCTGTAGCTATTCAAGCTGGTATCCACGGTATGATTGCCCGTAACGAGCTTGAGTTCAGGAGGCAGACAAGAGCTGCTATTATCATTCAGAGTCGATGTCGGCAATACTTGGCCCGCATGCATTATTTGAGGATAAAAAAAGCTGCAATTACTACTCAATGTGCTTGGAGAGGAAGAGTTGCACGCAAAGAACTTCGAAAGCTTAAAATGGCTGCTAAGGAAACAGGCGCTCTCCAAGCTGCCAAAAATCTGCTGGAGAAGCAAGTGGAAGAACTAACATGGAGATTGCAGCTAGAGAAACGAATGCGGGCTGACATGGAGGAAGCCAAGACTAAAGAAAACACAAAATTGAAGGCTGATTTGGAAGAAATGAGAACTCAATTTCAGGAAACGAAAGCACTGCTTAATGAGGAACGTGAAGCTGCAATGAAAGTAGTTGAGCAAGTTCCAGTCATACAGGAGGTTCCCGTTGTTGATCATGAGCTGATCAATAAGTTAACTACTGAAAATGAACAACTTAAGGCTCTTGTAAGTACTTTGGAAAATAAAATTGATGAAACAGAAAGGAAATTTGAGGAAATTAACAGACTTAGTGAAGAGCGGCTGAAGCAGGCTACGGAGGCAGAGTCAAAGATAATTGAATTAAAGACTGCCATGCAAAGGCTTGAGGAAAAATTATCTGACTTGGAAACTGAGGACCAAATTCTGAGGCAGCAAACACTGCTAAAGCCTCCTTCAAGAAAGATGTCTGGACGCATAGCAATGCAGCCTTTGGAAAATGGCCACCATGAATTACTAAGCAACGCTCCATCGAAAAAGTATGGTACTGATGCTGATGCAAAATTGAGGAGATCCCAAATTGAAAGGCAGAATGAAGGCATGGATGCTCTGTCAAAATACCTGACACAGGATCTTGGGTACAGTGAGGGAAAACCTGTTGCTGCTTTTGTAATTTATAAATCTTTTCTCCATTGGAGATCATTTGAAGCAGAAAAAACAAGTGTTTTTGATCGGCTTATTCAGCTGATTGGTTCTGCAATCGAGAATCAGGATGATAATGATCTTATGACCTATTGGTTATCCAACACAACTACATTGTTGTTCCTTCTTCAAAAGAGTTTAAAAACCACACCACGGAAGCCTCCCACCCCTACATCATTTTTTGAGCGGATGACCCAAGGTTTTCGGTCATCTTCTGCCCTTCCAGTTGGCACCCTTGATGTGGTGCGGCAAGTGGAAGCCAAATATCCTGCCCTACTTTTCAAGCAGCAGCTAACCGCGTATGTAGAAAAGATATATGGAATAGTTAGAGACAACCTAAAGAAGGAACTATCGCCATTGATTTCAACTTGTATTCAGGCTCCCAGATCTTCGAGAGGAAATATTTTGAAATCATCTGGCCAGGAAAATAGTAGTAGCCCTTCCAGTAATTCATGGAGCAGCATCATTGATAACCTTAATGATCATCTCTGTAGATTGCAAAAGAACTTTGTGCCTAACGTTTTGGTTCAGAAGATATTCACTCAGGTTTTTTCATATATCAACGTTCAACTTTTTAACAGTCTTCTACTTCGTCGAGAGTGCTGTACGTTTAGCAATGGGGAATATGTGAAGTCAGGATTGGCTGAGTTAGAGATTTGGTGTGGCCAAGCACAAGAAGAGTATGCTGGGTCATCTTGGGATGAGCTAAAACCGGTGAGGCAAGCTGTTGGATTCTTGGTTATTCACCAGAAGTCTAGAATATCTTATGATGAAATTACAAATGATCTCTGTCCAATATTGAGCGTTCAACAGCTTTATAGAATATGTACTCTTTATTGGGACGACAATTACAATACCAGGAGTGTAGCTCCAGATGTTATTTCTAGCATGAAGGTTTTGATGACTGAGGATTCCAATGATGAAGATAGTAGTTCCTTTTTGTTGGATGACAATTCCAGGACATACAACCTTGGTAAGAGCGACGTTTTGCAGAATCTTCCTCTATGGTTGGGTCGATATGTTGAGCCAGGCAAGTGGAATGGAATTTGTTTCGTAATTCCTCCCCGCCCTGAAGCTGCTGATTACTGGGGTCTCAAGTCCGGAAGGAGGTGGCATACAAGGCTTGTTGAAATGGTTAAAATTCATTGA | 4695 | 41.45 | MVSRMNDNAGPSRAHLFPSTFGVSLGIRYLDLGSVADRISPSMAGQVNLVVGSLVWIEDPEVAWLDGEVLEVNGQDIKVLCTTGTTVEVKSSNVYPKDPEFPPCGVDDMTKLAYLHEPGLLQNLKSRYDVNEIYTYTGSILIAVNPFRRLPHLYDNHMMQQYKGAALGELSPHPFAIANSAYRQMISESISQSILVSGESGAGKTESTKMLMRYLAHVGGRAGGKAATGERSVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDQSWRISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCAAPTEEIEKYKLGNPRTFHYLNQSNCCELDGVDDSKEYLSTRKAMDVVGISTTEQDAIFRVVAAVLHLGNVEFAKGKDADSSEPKDDKARFHLKMAAELFMCDEKALEDSMCTRVIVTRDETITKCLDPDSASLSRDALAKIVYSRLFDWIVDKINNSIGQDPHSKNLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIEFIDNQDVLDLIEKKPGGVIALLDEACMFPRSTHDTFAQKLYQTFKDHKRFSKPKLSRTDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCPFVSGLFPPLPEETSKSSKFSSIGTRFKQQLQSLLETLNATEPHYIRCVKPNNLLKPAIFENNNVLQQLRCGGVMEAIRISCAGYPTRKTFDEFIGRFTILAPDVLKGSSNEATACKRLLEKVNLKGYQIGKTKVFLRAGQMAELDACRTEVLGRSAIVIQRKVRSYLGRKNFILLRLAAIQIQALCRGQVARQHYEDIRKEAASIKIQKYWRMHFDRCCYKRLCSSAVAIQAGIHGMIARNELEFRRQTRAAIIIQSRCRQYLARMHYLRIKKAAITTQCAWRGRVARKELRKLKMAAKETGALQAAKNLLEKQVEELTWRLQLEKRMRADMEEAKTKENTKLKADLEEMRTQFQETKALLNEEREAAMKVVEQVPVIQEVPVVDHELINKLTTENEQLKALVSTLENKIDETERKFEEINRLSEERLKQATEAESKIIELKTAMQRLEEKLSDLETEDQILRQQTLLKPPSRKMSGRIAMQPLENGHHELLSNAPSKKYGTDADAKLRRSQIERQNEGMDALSKYLTQDLGYSEGKPVAAFVIYKSFLHWRSFEAEKTSVFDRLIQLIGSAIENQDDNDLMTYWLSNTTTLLFLLQKSLKTTPRKPPTPTSFFERMTQGFRSSSALPVGTLDVVRQVEAKYPALLFKQQLTAYVEKIYGIVRDNLKKELSPLISTCIQAPRSSRGNILKSSGQENSSSPSSNSWSSIIDNLNDHLCRLQKNFVPNVLVQKIFTQVFSYINVQLFNSLLLRRECCTFSNGEYVKSGLAELEIWCGQAQEEYAGSSWDELKPVRQAVGFLVIHQKSRISYDEITNDLCPILSVQQLYRICTLYWDDNYNTRSVAPDVISSMKVLMTEDSNDEDSSSFLLDDNSRTYNLGKSDVLQNLPLWLGRYVEPGKWNGICFVIPPRPEAADYWGLKSGRRWHTRLVEMVKIH | 1564 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 3531561 | 3559328 | - | CcPI632755_05g004320.1 | Cco05g0432 | 178060 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco05g0432 | 1564 | FunFam | Class V myosin | 485 | 627 | - | - | |
| Cco05g0432 | 1564 | Gene3D | - | 713 | 776 | - | - | |
| Cco05g0432 | 1564 | Coils | Coil | 1018 | 1055 | - | - | |
| Cco05g0432 | 1564 | ProSiteProfiles | Dilute domain profile. | 1192 | 1485 | IPR002710 | - | |
| Cco05g0432 | 1564 | CDD | MYSc_Myo11 | 118 | 766 | IPR036018 | - | |
| Cco05g0432 | 1564 | ProSiteProfiles | Myosin N-terminal SH3-like domain profile. | 50 | 99 | IPR004009 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Cco05g0432 | 1564 | Gene3D | - | 831 | 879 | - | - | |
| Cco05g0432 | 1564 | Gene3D | - | 781 | 830 | - | - | |
| Cco05g0432 | 1564 | Gene3D | - | 880 | 928 | - | - | |
| Cco05g0432 | 1564 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 831 | 929 | IPR027417 | - | |
| Cco05g0432 | 1564 | Pfam | DIL domain | 1360 | 1465 | IPR002710 | - | |
| Cco05g0432 | 1564 | Gene3D | - | 298 | 356 | - | - | |
| Cco05g0432 | 1564 | Coils | Coil | 1060 | 1094 | - | - | |
| Cco05g0432 | 1564 | ProSiteProfiles | Myosin motor domain profile. | 104 | 778 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Cco05g0432 | 1564 | FunFam | Myosin heavy chain | 298 | 353 | - | - | |
| Cco05g0432 | 1564 | Gene3D | - | 485 | 669 | - | - | |
| Cco05g0432 | 1564 | SMART | iq_5 | 851 | 873 | IPR000048 | GO:0005515(InterPro) | |
| Cco05g0432 | 1564 | SMART | iq_5 | 780 | 802 | IPR000048 | GO:0005515(InterPro) | |
| Cco05g0432 | 1564 | SMART | iq_5 | 876 | 898 | IPR000048 | GO:0005515(InterPro) | |
| Cco05g0432 | 1564 | SMART | iq_5 | 899 | 921 | IPR000048 | GO:0005515(InterPro) | |
| Cco05g0432 | 1564 | SMART | iq_5 | 828 | 850 | IPR000048 | GO:0005515(InterPro) | |
| Cco05g0432 | 1564 | SMART | iq_5 | 803 | 825 | IPR000048 | GO:0005515(InterPro) | |
| Cco05g0432 | 1564 | SMART | MYSc_2a | 98 | 779 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Cco05g0432 | 1564 | ProSiteProfiles | IQ motif profile. | 804 | 833 | - | - | |
| Cco05g0432 | 1564 | ProSiteProfiles | IQ motif profile. | 900 | 929 | - | - | |
| Cco05g0432 | 1564 | Pfam | Myosin head (motor domain) | 106 | 766 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Cco05g0432 | 1564 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 75 | 831 | IPR027417 | - | |
| Cco05g0432 | 1564 | PANTHER | MYOSIN | 55 | 1484 | - | GO:0000146(PANTHER)|GO:0005737(PANTHER)|GO:0007015(PANTHER)|GO:0015629(PANTHER)|GO:0030050(PANTHER)|GO:0031982(PANTHER)|GO:0051015(PANTHER) | |
| Cco05g0432 | 1564 | CDD | MyosinXI_CBD | 1143 | 1501 | IPR037975 | GO:0007015(InterPro) | |
| Cco05g0432 | 1564 | SMART | DIL_2 | 1360 | 1467 | IPR002710 | - | |
| Cco05g0432 | 1564 | Gene3D | Myosin VI head, motor domain, U50 subdomain | 358 | 647 | - | - | |
| Cco05g0432 | 1564 | ProSiteProfiles | IQ motif profile. | 854 | 881 | - | - | |
| Cco05g0432 | 1564 | FunFam | Myosin 2 | 358 | 475 | - | - | |
| Cco05g0432 | 1564 | FunFam | Myosin XI D | 781 | 830 | - | - | |
| Cco05g0432 | 1564 | FunFam | unconventional myosin-Va | 879 | 927 | - | - | |
| Cco05g0432 | 1564 | Coils | Coil | 937 | 957 | - | - | |
| Cco05g0432 | 1564 | PRINTS | Myosin heavy chain signature | 134 | 153 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Cco05g0432 | 1564 | PRINTS | Myosin heavy chain signature | 242 | 269 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Cco05g0432 | 1564 | PRINTS | Myosin heavy chain signature | 191 | 216 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Cco05g0432 | 1564 | PRINTS | Myosin heavy chain signature | 528 | 556 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Cco05g0432 | 1564 | PRINTS | Myosin heavy chain signature | 475 | 503 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Cco05g0432 | 1564 | ProSiteProfiles | IQ motif profile. | 877 | 906 | - | - | |
| Cco05g0432 | 1564 | Gene3D | Kinesin motor domain | 107 | 708 | IPR036961 | - | |
| Cco05g0432 | 1564 | ProSiteProfiles | IQ motif profile. | 829 | 858 | - | - | |
| Cco05g0432 | 1564 | Coils | Coil | 962 | 996 | - | - | |
| Cco05g0432 | 1564 | Pfam | Myosin N-terminal SH3-like domain | 51 | 94 | IPR004009 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Cco05g0432 | 1564 | Pfam | IQ calmodulin-binding motif | 878 | 897 | IPR000048 | GO:0005515(InterPro) | |
| Cco05g0432 | 1564 | Pfam | IQ calmodulin-binding motif | 807 | 824 | IPR000048 | GO:0005515(InterPro) | |
| Cco05g0432 | 1564 | Pfam | IQ calmodulin-binding motif | 831 | 850 | IPR000048 | GO:0005515(InterPro) | |
| Cco05g0432 | 1564 | Pfam | IQ calmodulin-binding motif | 902 | 921 | IPR000048 | GO:0005515(InterPro) | |
| Cco05g0432 | 1564 | Pfam | IQ calmodulin-binding motif | 783 | 801 | IPR000048 | GO:0005515(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco03g1583 | Cco-Chr3:30448169 | Cco05g0432 | Cco-Chr5:3531561 | 0.00E+00 | dispersed | |
| Cco05g0432 | Cco-Chr5:3531561 | Cco08g1134 | Cco-Chr8:23140374 | 0.00E+00 | dispersed | |
| Cco02g1533 | Cco-Chr2:27976250 | Cco05g0432 | Cco-Chr5:3531561 | 7.40E-163 | transposed | |
| Cco09g0345 | Cco-Chr9:3058115 | Cco05g0432 | Cco-Chr5:3531561 | 0.00E+00 | transposed | |
| Cco11g1900 | Cco-Chr11:31701923 | Cco05g0432 | Cco-Chr5:3531561 | 4.60E-150 | transposed | |
| Cco05g0432 | Cco-Chr5:3531561 | Cco06g0132 | Cco-Chr6:1302224 | 0.00E+00 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco05g0432 | K10357 | - | csv:101221506 | 2756.09 |