Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0437 ATGAGGAGAAATGGGAGAACTGATTCGTCTTTTTGCAGTCCTTTCGTCTTCCTCCTTTCTCTGAACTCCAAAAAAATGGATTCAGGGTTCTGCGCCGCCCATCTCTCTCAGCTTCTCGGCCCCAACACAACCAACGCCACCGCCGCTGCTAATTTCATCTGCGATCAGTTCACCACCGTCACCAACAACTTCTCCGACACCAAAAATGCCCTCGACAACACCTACCTTCTCTTCTCCGCCTACCTTGTCTTTTCTATGCAACTCGGCTTCGCCATGCTCTGCGCCGGCTCCGTCCGCGCCAAAAACACAATGAACATCATGCTCACCAATGTCCTCGACGCCGCTGCCGGCGGCCTCTTCTATTACCTTTTCGGCTACGCCTTCGCCTTCGGCTCCCCGTCCAATGGCTTCATCGGCCGCCATAAATTCGGTCTCACCTCCTTTCCGACCTCCACTGCCGATTACAGCTTCTTCCTCTACCAATGGGCCTTTGCGATCGCTGCCGCCGGGATTACCAGTGGATCTATCGCCGAGCGGACTCAGTTCGTCGCCTATTTGATTTATTCCTCTGTTTTGACTGGATTCGTTTATCCGGTGGTTTCTCACTGGTTCTGGTCTCCCGATGGTTGGGCTGGGGTTATGAAATCCGATGGCGGACTGTTGTTCGGATCGGGAGTTATCGACTTCGCCGGCTCCGGCGTCGTTCATATGGTTGGGGGAGTTGCTGGTCTATGGGGCGCGTTGATCGAGGGGCCGAGAATAGGTCGATTCGACCACACCGGCCGGTCGGTGGCTCTGCGAGGGCACAGCGCTTCTTTAGTCGTTCTCGGAACTTTCATGCTCTGGTTCGGATGGTACGGTTTCAATCCAGGTTCGTTCGCGAAGATTCTCGTCCCTTACACCAGCGGAAACTTCTACGGCCAGTGGAGCGCCGTCGGACGGACGGCGGTCACCACCACGCTCGCCGGATGCACGGCGGCACTCACCACGCTCTTCGGGAAGCGATTCCTCTCAGGGCACTGGAACGTGACGGACGTTTGTAACGGGCTCCTTGGGGGCTTCGCCGCCATCACCTCCGGCTGTTCCGTCGTCGAGCCATGGGCAGCAATCATCTGCGGATTCGTCGCCGCTCTCGTGCTAATAACCTGCAACCGAATCGCAGAGAAAGCAAAATACGACGATCCATTAGAAGCCGCTCAACTCCACGGCGGGTGCGGCGCGTGGGGAGTTATATTCACAGCACTCTTCGCAACGAAGGAGTACGTAACGGAAGTATACGGCGGATCGGGGCGTCCGTACGGCCTCCTGATGGGCGGCGGCGGGAGGTTACTGGCAGCGCATTTGGTACAGATTTTGGTGATCGTGGGGTGGGTGAGCGCAACGATGGGGCCATTGTTCTTTGTTCTTCACAAATTGAAGCTTCTGAGAATCTCCTCTGAAGATGAAATGGCGGGAATGGATCTGACCCGCCATGGCGGATTTGCGTACATTTATCACGATGAAGATGAAGCCCAGAAAATGGGGATTCAGTTGAACAGAGTAGAACCAAAATCTGCAACTCCAACCGGAGATTATTGA 1578 55.45 MRRNGRTDSSFCSPFVFLLSLNSKKMDSGFCAAHLSQLLGPNTTNATAAANFICDQFTTVTNNFSDTKNALDNTYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLFYYLFGYAFAFGSPSNGFIGRHKFGLTSFPTSTADYSFFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSVLTGFVYPVVSHWFWSPDGWAGVMKSDGGLLFGSGVIDFAGSGVVHMVGGVAGLWGALIEGPRIGRFDHTGRSVALRGHSASLVVLGTFMLWFGWYGFNPGSFAKILVPYTSGNFYGQWSAVGRTAVTTTLAGCTAALTTLFGKRFLSGHWNVTDVCNGLLGGFAAITSGCSVVEPWAAIICGFVAALVLITCNRIAEKAKYDDPLEAAQLHGGCGAWGVIFTALFATKEYVTEVYGGSGRPYGLLMGGGGRLLAAHLVQILVIVGWVSATMGPLFFVLHKLKLLRISSEDEMAGMDLTRHGGFAYIYHDEDEAQKMGIQLNRVEPKSATPTGDY 525
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3576277 3577854 - CcPI632755_05g004370.1 Cco05g0437 178065
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0437 525 SUPERFAMILY Ammonium transporter 69 477 - -
Cco05g0437 525 PANTHER AMMONIUM TRANSPORTER 45 504 - GO:0005887(PANTHER)|GO:0008519(PANTHER)|GO:0072488(PANTHER)|GO:0097272(PANTHER)
Cco05g0437 525 Gene3D Ammonium transporter AmtB like domains 50 515 IPR029020 -
Cco05g0437 525 ProSitePatterns Ammonium transporters signature. 228 253 IPR018047 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Cco05g0437 525 NCBIfam ammonium transporter 72 496 IPR001905 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Cco05g0437 525 FunFam Ammonium transporter 53 511 - -
Cco05g0437 525 Pfam Ammonium Transporter Family 75 496 IPR024041 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0437 Cco-Chr5:3576277 Cco06g0789 Cco-Chr6:9122317 3.30E-240 dispersed
Cco05g0437 Cco-Chr5:3576277 Cco07g0145 Cco-Chr7:1488972 5.10E-201 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0437 K03320 - csv:101208366 907.131