Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0439 ATGGGAATTATGAGATTATCATCAACATCAACGTCATGGCCATGGGGATGGTTGAAATTCAACCCAATTTTCAACCCCAAATTCCGGGCTCCGGGCCGCAATCGGATCTTCCCCACCATTCACAATCACACAACCATATCTCCCAAATCCCATCTTCCCCACCATTCATTTCCCATGCCTATTTCCTCCTCCCCCATCTCCGCCCCCCGGCGCCGTCTCCGGGGAGTCGTCTTCGACATGGACGGAACCCTAACTGTACCCGTCATCGATTTCGCCGCTATGTATCGATCGGTGCTCGGCGATGAGGAGTATGTCAGAATTAAAGCTCTCAATCCATCCGGAATTGATATTTTGCACATTATTCAGAGCTGGGCACCTGAGAAGCAGCGGCGGGCTTATGAGGTAATCGCCGATTTTGAGCGTCAGGGAATGGATCGCCTCCAAATTATGCCCGGTGCTGCAGAGCTTTGTACCTTTCTTGATTCCAAGAATATAAGGAGGGGACTAATTACCCGCAATATAAAGGAAGCTGTCGATATTTTTCACGAGCGTTTTGGTTGGACATTTCATCCAGCCTTAAGCAGGGAATTTGGTTCTTATAAACCCAATCCTGCTCCCCTACTTCATATCTGCTCTTCTTGGGATGTCCTGCCTAATGAAGTAATTATGATTGGCGACAGCCTCCGAGATGACATTGGATGTGGCAAGGGAGCAGGAGCTTTCACATGTTTGCTAGATGAAACAGGAAGGTACAACTCAGAGCATTTTGTGAACTTGGATCTTGAGCCAGATTTTAAAGTATCGACGCTTGGTGAAGTTCTTCATCTTTTGGATGCAAATTTTGACTTGACCCCATGA 858 47.44 MGIMRLSSTSTSWPWGWLKFNPIFNPKFRAPGRNRIFPTIHNHTTISPKSHLPHHSFPMPISSSPISAPRRRLRGVVFDMDGTLTVPVIDFAAMYRSVLGDEEYVRIKALNPSGIDILHIIQSWAPEKQRRAYEVIADFERQGMDRLQIMPGAAELCTFLDSKNIRRGLITRNIKEAVDIFHERFGWTFHPALSREFGSYKPNPAPLLHICSSWDVLPNEVIMIGDSLRDDIGCGKGAGAFTCLLDETGRYNSEHFVNLDLEPDFKVSTLGEVLHLLDANFDLTP 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3588060 3591288 + CcPI632755_05g004390.1 Cco05g0439 178067

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0439 285 SFLD Haloacid Dehalogenase 74 278 - -
Cco05g0439 285 PANTHER HALOACID DEHALOGENASE-LIKE HYDROLASE 52 285 - GO:0009507(PANTHER)
Cco05g0439 285 FunFam Haloacid dehalogenase-like hydrolase domain-containing protein 86 147 - -
Cco05g0439 285 Gene3D - 76 249 IPR023214 -
Cco05g0439 285 Pfam haloacid dehalogenase-like hydrolase 74 239 - -
Cco05g0439 285 SUPERFAMILY HAD-like 67 279 IPR036412 -
Cco05g0439 285 SFLD C1.5: HAD, Beta-PGM, Phosphatase Like 74 278 - -
Cco05g0439 285 NCBIfam HAD-IA family hydrolase 76 239 IPR006439 -
Cco05g0439 285 Gene3D - 86 147 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0439 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g807 . . . Bda08g00010 . . . Bma05g01261 . . Cma06g01286 Cma14g01854 Car06g01104 Car14g01661 . Cpe08g00364 Cpe03g01553 . . . . . . . . . . . . . . . . Cone7ag0359 Cone4ag0371 Lsi05g01782 . . Cme06g00439 . . . . Bpe05g01116 . . . . Cmo06g01291 Cmo14g01899 . . . . . . . . . . . . . Cla05g00398 Cam05g0434 Cec05g0440 Cco05g0439 Clacu05g0429 Cmu05g0410 Cre05g0471 . Csa03g01154 Chy06g00418 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006077 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 2 1 39