Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0440 ATGATTTGCTCACTAATTACCCCTGATTTCCCATTTCCCTCTCTCAAACCCATATTTGCCAGACCCCCACCAACGCCATCTCCCTCTTTTTCCAAACCCATCCTCTGTTTGCACCATCGAAACCCCAATATCTTCGAAAACCCATCAAAACCCATCGGCATTCTCATCAAAACGCTTCTAGAGAGCAATCCAGATCGTGTTTTGTACAGAGAAGTGAAGAAAAAAGAAGGGAACGGCGGAAGAAGAGGGTTTCATCTTGTGGGTAGTCATCAAATGTTGCTCCTCTGTGGACTTGGGTATTGGGTTCAGGGCTTTAGGTGCTTTCCATGGCTGGCTCTGAACTATCATATGGCTCATTACCTTAATCTTCATCCTTCCATATTGCAACTTGTGCAGAATTCTGGAAACCTTCCTATGGTTGCTAAACCCTTGTACGGAATTCTCTCTGATGCTTTGTATATTGGTGGGGCTCGCAGAGTTCCTTATGTTTCAGTTGGAGTGCTCTTGCAGGTCCTATCTTGGGGATCTTTGGCATTGATCCCTGTGGCAGGTGAAGCTCTTCCTGCTTTAATGGCATGTGTTCTTCTAAGTAATCTTGGAGCATCCATAACAGAAGTTGCAAAAGACGCACTTGTTGCAGAATATGGCCAAACAAACAAAATTTGTGGCCTTCAATCCTATACATTCATGGCTTTAGCTGTTGGTGGAGTGTTAGGCAATTTTATTGGTGGATATAACTTACTGAGTTCACCACCAAGAAAAATGTTTCTTCTGTTTTCCATTTTACTTTCTCTCCAACTTTCAGTTTCATTAGCAACAAGAGAGGAATCTCTTGGTTTGCTGCAACTTCCAGAACCTGATGTTCATGGGAAATCAATCATGGAAAATGTTAGAAATCAGATATCTGACCTTGTAACTGCTATTAGCGATCCAGGCGTATCTCGCCCGCTGGCTTGGATTGTAGCTTCCATTGCCATGGTCCCTCTTCTATCAGGCTCTATCTTTTGCTATCAAACACAATGCCTTAATCTTGATCCTTCCATAATTGGAATGTCTAGAGTTGTTAGCCAATTGGTTCTTCTTTCTGTTACCGTACTTTACGACCGCCATTGGAAAAGAGTATCCATGAAGAAGCTAATTGGCATGGTGCAGATATTGTATGCTTTTTCCTTTCTCCTTGATATTGTTTTGGTGAAACAGATAAATCTGAAGCTGGGCATTTCCAATGAGTTGTTTGCTCTTTGCTTTTTGGGTTTGGCTGAAACCATTGCACAGTTTAAACTTTTACCATTTTCAGTACTCTTTGCAAGCTTAAGTCCGAAAGGTTGTGAAGGATCTCTGATTTCGTTTTTCGCATCGGCCGTGTGCTTGTCTTCCATAGTTAGTGGTTTTTTTGGCATCGGGTTGGCTTCTTTGATTGGAATAAGATCAGGAAACTACTCAAGCTTGCCAATGGGGATTTTGATACAGTTCATTGCAGCTTTATTGCCATTAATCTGGATCCATTTTGTTCCCACGACGTCACCTGTTGTCGAAAGAGAAAAGAAGAGAGCAATGAGTAGAAGATCTCGGAAAAATAGAAGGGTCGGACGAGTCATGTATAGTGGTTCTGTAAATGTTTATCGACGCGAGAGAGAATCCGAGATGCAGGGGTGA 1656 42.27 MICSLITPDFPFPSLKPIFARPPPTPSPSFSKPILCLHHRNPNIFENPSKPIGILIKTLLESNPDRVLYREVKKKEGNGGRRGFHLVGSHQMLLLCGLGYWVQGFRCFPWLALNYHMAHYLNLHPSILQLVQNSGNLPMVAKPLYGILSDALYIGGARRVPYVSVGVLLQVLSWGSLALIPVAGEALPALMACVLLSNLGASITEVAKDALVAEYGQTNKICGLQSYTFMALAVGGVLGNFIGGYNLLSSPPRKMFLLFSILLSLQLSVSLATREESLGLLQLPEPDVHGKSIMENVRNQISDLVTAISDPGVSRPLAWIVASIAMVPLLSGSIFCYQTQCLNLDPSIIGMSRVVSQLVLLSVTVLYDRHWKRVSMKKLIGMVQILYAFSFLLDIVLVKQINLKLGISNELFALCFLGLAETIAQFKLLPFSVLFASLSPKGCEGSLISFFASAVCLSSIVSGFFGIGLASLIGIRSGNYSSLPMGILIQFIAALLPLIWIHFVPTTSPVVEREKKRAMSRRSRKNRRVGRVMYSGSVNVYRRERESEMQG 551
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3598208 3600301 + CcPI632755_05g004400.1 Cco05g0440 178068

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0440 551 Pfam BT1 family 103 519 IPR039309 -
Cco05g0440 551 NCBIfam folate/biopterin family MFS transporter 171 527 IPR004324 GO:0016020(InterPro)
Cco05g0440 551 Gene3D MFS general substrate transporter like domains 91 496 IPR036259 -
Cco05g0440 551 PANTHER FOLATE-BIOPTERIN TRANSPORTER 1, CHLOROPLASTIC 89 531 IPR039309 -
Cco05g0440 551 SUPERFAMILY MFS general substrate transporter 93 504 IPR036259 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0440 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0830 Cco-Chr2:9563698 Cco05g0440 Cco-Chr5:3598208 2.00E-89 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g806 . . . . . . . . . . . Cma14g01853 . Car14g01660 . . Cpe03g01552 . . . . . . . . . . . . . . . . Cone7ag0358 Cone4ag0370 Lsi05g01781 . . Cme06g00440 . Blo07g00290 Bda11g00652 . . Bpe13g00535 . . . . Cmo14g01898 . . . . . . . . . . . . . Cla05g00399 Cam05g0435 Cec05g0441 Cco05g0440 Clacu05g0430 Cmu05g0411 Cre05g0472 . Csa03g01156 Chy06g00419 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010245 1 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 32