Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0450 ATGGGCACGCCCTTTCACATTCCGGTCACTGCTGCTCAGGTGGGAACATACTTTGTTGGGCAGTACTATCAGGTTCTTCAGCAGCAACCTGACTATGTTTATCAGTTCTATTCCGATGCCAGTACTATGATTCGTATTGATGGCAATTTCAGAGAGACCGCCACTGCAATGCTGCAAATACATGCACTTGTTATGTCACTTAGTTATACTGGGATTGAGATCAAGACCGCACATTCACTAGAATCATGGAATGGTGGTGTTCTTGTGATGGTTTCTGGCTCTGTTCAAATGAAGAATCTCAATCGAATGAGAAAGTTTGTGCAAACTTTTTTTCTTGCACCCCAAGAGAAAGGCTATTTTGTTCTGAATGATATCTTTCACTTTGTTGATGAGGAGCCAGTCCACCATTATCCAGCAGTCTTATTAAGTCAGAGCAATCTGGATTCCACCTTAAATGCTCCTACCACAGTTCCAGAGACAGTGCCCAATTACTCACTTAATGGAGCAGAACAGACACGAGAGTTTTCAGCCCCTGTTGTCAAAGAAAATGGTCACGTCGATAACCATAAGTTTGTAGAGCAGAAAGTGCTGCAAGTTTCAGAGCCGAAAAGCATTATTGAGGAAAATACAGCAGAAGTAAATTCTATGCATCAGAACACATCAACTGGTTCACAAGATCATTTTCCTGTTTCTGTTGAAGAACATGCTGAGGAGCCCCAAAAGCATACATATGCTTCAATTCTAAGAGTTGCTAAAGGACAAGATGTTCCTGCCGCCACTGTTGCTCCTCAATATCCTGTTAGTAAGGAGACACCACCTGCTTCAGAGCAAAACTACACTCCACCACCCACCAGTCAGCAAGTAACTTCAGCTCCCCAAAATAACTCTGAAAGGGAACAGACAGGAGGGGAGTTCCCTTCTATTGATGATGAAGGTGAAATAAAGTCTGTTTATGTAAGAAATTTGCCATCCACTGTGTCTGCTTCAGAAATTGAGGAGGAATTCAAGCATTTTGGCAAACTCAGTTCCGATGGAGTGGTTATTAGGAGTCGCAAGGATGTTGGTTTCTGCTATGCGTTTGTCGAATTTGAAGACATCACTGGTGTCCAAAATGCAATCAAGGCAGGTACTGTCCAGGTTGCTGGACGTCAAGTATACATTGAGGAGCGGAGAGCAAACAGCAACATCCCACACCGAGGAGGAAGAAGGGGTAGAGGAAGAGGGAGCTATCACACCGAGTCTTCAAAGGGACATTATAATTCTCGTAGTTACAGTTACAGTATGGGAGTTCGAGATGGAAGTGACCGTGAGTACATCAGACCAAGGGGCAACGGCTTCTATCGACCTACTACGCGACAGGAAAAAGGGAACGTAAGCCATCAAGTAACAAAAAATGGAGAAACTCCATCAGATTCATTATAG 1422 43.67 MGTPFHIPVTAAQVGTYFVGQYYQVLQQQPDYVYQFYSDASTMIRIDGNFRETATAMLQIHALVMSLSYTGIEIKTAHSLESWNGGVLVMVSGSVQMKNLNRMRKFVQTFFLAPQEKGYFVLNDIFHFVDEEPVHHYPAVLLSQSNLDSTLNAPTTVPETVPNYSLNGAEQTREFSAPVVKENGHVDNHKFVEQKVLQVSEPKSIIEENTAEVNSMHQNTSTGSQDHFPVSVEEHAEEPQKHTYASILRVAKGQDVPAATVAPQYPVSKETPPASEQNYTPPPTSQQVTSAPQNNSEREQTGGEFPSIDDEGEIKSVYVRNLPSTVSASEIEEEFKHFGKLSSDGVVIRSRKDVGFCYAFVEFEDITGVQNAIKAGTVQVAGRQVYIEERRANSNIPHRGGRRGRGRGSYHTESSKGHYNSRSYSYSMGVRDGSDREYIRPRGNGFYRPTTRQEKGNVSHQVTKNGETPSDSL 473
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3660843 3663822 - CcPI632755_05g004500.1 Cco05g0450 178078

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0450 473 MobiDBLite consensus disorder prediction 264 312 - -
Cco05g0450 473 MobiDBLite consensus disorder prediction 270 302 - -
Cco05g0450 473 CDD RRM_SF 317 388 - -
Cco05g0450 473 SUPERFAMILY RNA-binding domain, RBD 313 420 IPR035979 GO:0003676(InterPro)
Cco05g0450 473 SMART rrm1_1 316 388 IPR000504 GO:0003723(InterPro)
Cco05g0450 473 MobiDBLite consensus disorder prediction 391 473 - -
Cco05g0450 473 SUPERFAMILY NTF2-like 10 129 IPR032710 -
Cco05g0450 473 MobiDBLite consensus disorder prediction 413 428 - -
Cco05g0450 473 CDD NTF2 10 130 IPR018222 -
Cco05g0450 473 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 8 431 IPR039539 GO:0003729(PANTHER)|GO:0005829(PANTHER)|GO:1990904(PANTHER)
Cco05g0450 473 MobiDBLite consensus disorder prediction 450 473 - -
Cco05g0450 473 Gene3D - 284 454 IPR012677 -
Cco05g0450 473 Pfam Nuclear transport factor 2 (NTF2) domain 14 128 IPR002075 -
Cco05g0450 473 ProSiteProfiles Nuclear transport factor 2 domain profile. 14 128 IPR018222 -
Cco05g0450 473 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 315 392 IPR000504 GO:0003723(InterPro)
Cco05g0450 473 FunFam Nuclear transport factor 2 family protein 5 132 - -
Cco05g0450 473 Pfam RNA recognition motif 317 375 IPR000504 GO:0003723(InterPro)
Cco05g0450 473 Gene3D - 7 132 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0450 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0450 Cco-Chr5:3660843 Cco06g1756 Cco-Chr6:28051979 2.30E-43 dispersed
Cco05g0450 Cco-Chr5:3660843 Cco06g0144 Cco-Chr6:1446093 1.90E-109 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g785 . . . . . Bpe14g01284 . . . . Cma06g01289 Cma14g01845 Car06g01107 Car14g01653 . Cpe08g00362 Cpe03g01545 . . . . . . . . . . . . . . . . Cone7ag0352 Cone4ag0365 Lsi05g01775 . . . Blo02g00687 . . Bda13g00036 . . . . . Cmo06g01295 Cmo14g01889 . . . . . . . . . . . . . Cla05g00405 Cam05g0442 Cec05g0449 Cco05g0450 Clacu05g0439 Cmu05g0417 Cre05g0479 . Csa03g01165 Chy06g00427 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007215 1 4 1 0 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 37