Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0451 ATGGCCGCCGCCGCCGCCGCCACCGGAGCCTCATTCTTCACCACTCTCATAAGGGGTTCACGGTCCAAGCACTGGCTCTCTGATTCTCTACTCTCAACCCCATCCACCCAAGTTTTGCCCATATTGTCCCGCTCTCTGGCCATTGAATCGGCTCCGCTCAGAGCTTTCTCGGAGAGGTGGCGGCCGGTTCTGTTCATATCGGCCGCCGTTGTGCAAGGAGAGACGGCTGTGACGGCAGGGGTTGAAGAGGGAGTGGAGGAGGAGACGGCGGAGAAGGGAGGAGGGGAGGCGGTGGATGGTGGTTCTCCAGTGGAGTCCGGGAGTACTAAGCTGTATTTTGGGAATTTGCCTTACAGTGTTGATAGTGCCCAGCTCGCCGCTATTGTCCAGGATTATGGTGTCGCGGAGCTTATCGAGGTTCTGTATGACAGGAATACTGGAAAAAGTAGAGGATTCGCATTTGTAACCATGAGCAGTATTGAAGATTGCAATAAAGTCATTGAAAATCTGGATGGAACTGCTTACATGGGAAGAATTTTGAGGGTTAATTTCTCAGACAAACCCAAGCCCAAGGAACCTTTATATCCAGAAACTGAGTATAAACTTTTTGTCGGAAACTTATCCTGGTCAGTAACATCTGAAAGTTTGACACAAGCATTTCAAGAATATGGAAATGTGATAGGAGCAAGGGTTATTTATAACGGGGAGACTGGAAAGTCACGTGGTTATGGCTTTGTTTCTTATTCAACAAAATCAGAGATGGAAACAGCTCTTGAAGCTCTTAATGAAGTGGAACTTGAAGGCAGGGTAATACGTGTAAGCTTGGCTGAAGGAAAGCAGGCACAGGGGTCAATGTAG 858 48.72 MAAAAAATGASFFTTLIRGSRSKHWLSDSLLSTPSTQVLPILSRSLAIESAPLRAFSERWRPVLFISAAVVQGETAVTAGVEEGVEEETAEKGGGEAVDGGSPVESGSTKLYFGNLPYSVDSAQLAAIVQDYGVAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAYMGRILRVNFSDKPKPKEPLYPETEYKLFVGNLSWSVTSESLTQAFQEYGNVIGARVIYNGETGKSRGYGFVSYSTKSEMETALEALNEVELEGRVIRVSLAEGKQAQGSM 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3666342 3668754 - CcPI632755_05g004510.1 Cco05g0451 178079

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0451 285 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 109 187 IPR000504 GO:0003723(InterPro)
Cco05g0451 285 FunFam 28 kDa ribonucleoprotein, chloroplastic 191 282 - -
Cco05g0451 285 CDD RRM2_NsCP33_like 201 276 IPR048289 -
Cco05g0451 285 SMART rrm1_1 110 183 IPR000504 GO:0003723(InterPro)
Cco05g0451 285 SMART rrm1_1 201 274 IPR000504 GO:0003723(InterPro)
Cco05g0451 285 SUPERFAMILY RNA-binding domain, RBD 193 281 IPR035979 GO:0003676(InterPro)
Cco05g0451 285 MobiDBLite consensus disorder prediction 82 103 - -
Cco05g0451 285 Pfam RNA recognition motif 111 180 IPR000504 GO:0003723(InterPro)
Cco05g0451 285 Pfam RNA recognition motif 202 272 IPR000504 GO:0003723(InterPro)
Cco05g0451 285 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 200 278 IPR000504 GO:0003723(InterPro)
Cco05g0451 285 SUPERFAMILY RNA-binding domain, RBD 104 191 IPR035979 GO:0003676(InterPro)
Cco05g0451 285 Gene3D - 73 189 IPR012677 -
Cco05g0451 285 PANTHER OS02G0815200 PROTEIN 55 279 IPR050502 GO:0003729(PANTHER)|GO:0009535(PANTHER)|GO:1901259(PANTHER)
Cco05g0451 285 Gene3D - 190 285 IPR012677 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0451 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0451 Cco-Chr5:3666342 Cco10g1811 Cco-Chr10:31697597 4.60E-39 dispersed
Cco10g1230 Cco-Chr10:25025350 Cco05g0451 Cco-Chr5:3666342 6.00E-06 dispersed
Cco05g0451 Cco-Chr5:3666342 Cco09g0370 Cco-Chr9:3372967 9.00E-35 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g784 . . Bda03g01097 . Bpe04g00983 . Bma04g01022 . . . . Cma14g01844 . . . Cpe08g00361 Cpe03g01544 . . . . . . . . . . . . . . Cone14ag0183 Cone15ag0192 . . Lsi05g01774 . . Cme06g00447 . . . . . . . . . Cmo06g01297 Cmo14g01887 . . . . . . . . . . . . . Cla05g00406 Cam05g0443 Cec05g0451 Cco05g0451 Clacu05g0440 Cmu05g0418 Cre05g0480 . Csa03g01166 Chy06g00428 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012811 1 0 0 1 1 1 1 1 1 1 1 1 1 0 1 2 1 2 2 1 1 1 1 1 0 1 1 1 0 1 28