Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0459 ATGAACTGCTCCATCTCCGGTGAGATTCCGGAAGAGCCAGTTGTCTCCAAGAATTCTGGATTACTCTTCGAGAAGCGCTTAATCGAGAGGCACATTTTGGACTATGGGAAATGCCCTGTTACAGGTGAACCGCTTTCCATTGATGACATTGTTCCAATTAAAACCGGAAAGATAGTCAAGCCCAGGCAAGCTGCTAGCATCCCTGGAATGCTTGGAATGTTCCAGAACGAATGGGATGTTTTGGTGCTGTCCAATTTTGCATTAGAACAACAGCTGCATACAGCTAGACAGGAGCTTAGTCATGCCTTGTATCAGCATGATGCTGCATGTCGCGTGATTGCAAGACTTAAAAAGGAACGGGATGAGGCTAGGTCCTTACTTGCTCAGGCAGAGAGGCAGATGCCTTTGTCGGCAACTTCATTTTCATCCAATGCTGCTGCTGTCAATGTTAATGGGAAAAGAGTTAATGAGGATGAGGAATTGGGTCCTGATGGGAAGAAAATACGTCCAGGAATATCAGCCACTGTTATCTCTGAGCTCACAGATTGTAATGCTGCTCTATCACAACAAAGGAAGAGGCGGCAGATACCTCCTACGTTGGTTCCTGTTGAGGCTCTAGAAAGTTACACCCAGATTTCTAGTCATCCACTTCATAAAACAAGCAAACCAGGCATTATATCTCTTGACATCCATCATGAGAAGGATGTCATTGCGACTGGAGGGCTGGACACAAATGCTGTTCTTTTTGGTCGATCATCTGGGGAGATTTTATCTACACTAAGTGGCCATTCAAAGAAGGTAACAAGTGTCAAATTTGTGGGCCGAGATGATTTATTCTTGACTGGTTCAGCTGACAAGACTGTCCGTGTTTGGCAACAATCTGATGATGGGAACTACAATTGTAGGCACATTTTAAAGGATCATACAGCTGAGGTCCAAGCTGTTACCGTCCATGCTACCAATAACTTCTTTGTCACTGCCTCCCTTGATAACACATGGTGTTTTTATGAGCTTGCTTCGGGATTATGCCTGACCCAGGTTGCAGAGGATTCACAATCGGAGGGCTACACATCTGCTGCCTTTCATCCTGATGGTCTCATCCTTGGAACAGGCACGTCAGAGGCTCTTGTTAAAATTTGGGATGTAAAAAGTCAGAAAAATGTGGCCAAATTTGATGGACACGTTGGGGCAGTAACTGCAATATCTTTTTCTGAAAATGGTTATTTTCTTGCGACTGCAGCTCATGATGGAGTAAAGCTGTGGGACCTTCGAAAATTGAAGAACTTCCGTACATTTGCACCTTATGATTCAGAAACTCCAACAAACTCCGTGGACTTTGATCATAGTGGATCTTACCTTGCGATTGCTGGCTCAGACATAAGGGTTTACCAAGTTGCTAGTGTGAAATCTGAATGGAATTGCATCAAAACTATTCCAGATTTGTCTGGCACAGGGAAGGCAACTTGTCTAAAATTTGGACCGGATGCAAAATACTTGGCAGTCGGGTCAATGGATCGAAATCTTCGAATCTTTGGTGTGCCTGGGGAAGATGGATTGATTTATGGTATTAAGAAACAAGATTCTGAAGCAGAGGCGTCTTTGGAAGGTTCTCCAGCAAAGTTGAGAGTTCTTTACACCCAGATCAACAAAGGTGTCTGCCCGCCTTCATGTAGCCATAGAACTGTTAATATACGCTGA 1698 44.17 MNCSISGEIPEEPVVSKNSGLLFEKRLIERHILDYGKCPVTGEPLSIDDIVPIKTGKIVKPRQAASIPGMLGMFQNEWDVLVLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQAERQMPLSATSFSSNAAAVNVNGKRVNEDEELGPDGKKIRPGISATVISELTDCNAALSQQRKRRQIPPTLVPVEALESYTQISSHPLHKTSKPGIISLDIHHEKDVIATGGLDTNAVLFGRSSGEILSTLSGHSKKVTSVKFVGRDDLFLTGSADKTVRVWQQSDDGNYNCRHILKDHTAEVQAVTVHATNNFFVTASLDNTWCFYELASGLCLTQVAEDSQSEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQKNVAKFDGHVGAVTAISFSENGYFLATAAHDGVKLWDLRKLKNFRTFAPYDSETPTNSVDFDHSGSYLAIAGSDIRVYQVASVKSEWNCIKTIPDLSGTGKATCLKFGPDAKYLAVGSMDRNLRIFGVPGEDGLIYGIKKQDSEAEASLEGSPAKLRVLYTQINKGVCPPSCSHRTVNIR 565
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3699198 3707474 - CcPI632755_05g004590.1 Cco05g0459 178087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0459 565 SMART WD40_4 384 422 IPR001680 GO:0005515(InterPro)
Cco05g0459 565 SMART WD40_4 340 381 IPR001680 GO:0005515(InterPro)
Cco05g0459 565 SMART WD40_4 253 292 IPR001680 GO:0005515(InterPro)
Cco05g0459 565 SMART WD40_4 425 464 IPR001680 GO:0005515(InterPro)
Cco05g0459 565 SMART WD40_4 471 512 IPR001680 GO:0005515(InterPro)
Cco05g0459 565 SMART WD40_4 298 337 IPR001680 GO:0005515(InterPro)
Cco05g0459 565 SMART WD40_4 208 250 IPR001680 GO:0005515(InterPro)
Cco05g0459 565 FunFam pre-mRNA-processing factor 19 197 513 - -
Cco05g0459 565 FunFam Pre-mRNA-processing factor 19, putative 1 58 - -
Cco05g0459 565 PANTHER PRE-MRNA-PROCESSING FACTOR 19 1 512 IPR038959 GO:0000398(InterPro)|GO:0000398(PANTHER)|GO:0000974(PANTHER)|GO:0000974(InterPro)|GO:0004842(PANTHER)|GO:0005737(PANTHER)|GO:0006281(InterPro)|GO:0061630(InterPro)|GO:0071006(PANTHER)
Cco05g0459 565 Pfam Prp19/Pso4-like 64 129 IPR013915 -
Cco05g0459 565 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 391 424 - -
Cco05g0459 565 ProSiteProfiles U-box domain profile. 1 70 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cco05g0459 565 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 260 292 - -
Cco05g0459 565 SUPERFAMILY RING/U-box 1 53 - -
Cco05g0459 565 SMART Ubox_2 1 66 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cco05g0459 565 Pfam WD domain, G-beta repeat 357 381 IPR001680 GO:0005515(InterPro)
Cco05g0459 565 Pfam WD domain, G-beta repeat 386 422 IPR001680 GO:0005515(InterPro)
Cco05g0459 565 Pfam WD domain, G-beta repeat 255 291 IPR001680 GO:0005515(InterPro)
Cco05g0459 565 Pfam WD domain, G-beta repeat 474 511 IPR001680 GO:0005515(InterPro)
Cco05g0459 565 Pfam WD domain, G-beta repeat 300 336 IPR001680 GO:0005515(InterPro)
Cco05g0459 565 SUPERFAMILY WD40 repeat-like 222 511 IPR036322 GO:0005515(InterPro)
Cco05g0459 565 ProSiteProfiles Trp-Asp (WD) repeats profile. 391 431 IPR001680 GO:0005515(InterPro)
Cco05g0459 565 CDD WD40 224 511 - -
Cco05g0459 565 Gene3D - 200 513 IPR015943 GO:0005515(InterPro)
Cco05g0459 565 Coils Coil 113 133 - -
Cco05g0459 565 CDD RING-Ubox_PRP19 1 54 - -
Cco05g0459 565 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 60 IPR013083 -
Cco05g0459 565 ProSiteProfiles Trp-Asp (WD) repeats profile. 260 292 IPR001680 GO:0005515(InterPro)
Cco05g0459 565 ProSiteProfiles Trp-Asp (WD) repeats profile. 349 390 IPR001680 GO:0005515(InterPro)
Cco05g0459 565 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 349 384 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0459 Cco-Chr5:3699198 Cco10g1530 Cco-Chr10:28526887 6.20E-11 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0459 K10599 - csv:101204424 1014.99