Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0473 ATGATAAATTGTATTCGCTCAGGGGATCAGTTAAGAGTAGATGAAATGATTCATTCATCAGATTCTCTGGCGACTCGAGATTATTCAGCTAGTGGTTTTTCATCCCGAACTGGCGAGGTGGAACAAAAGGTGGATAATGGCAACATTGAAGAGGCCGAATCATCTCTTCGTGAGAGTGGCTATTTGAATTATGAGGAAGCACGTGCTTTACTTGGAAGGCTGGAGTATCAAAAGGGTAACATAGAAGCTGCTCTTCATGTATTTGAAGGAATAGATATTGCTGCTGTAATTTCCAGGATAAAAGCTTCCATTTCAACGAGATACGAACAAAATAGGCGCCAATCACAAAGTGATGTTATGCCTACTATGTCGATGCATGCAATTAGTTTACTTCTTGAAGCTATTTTTCTGAAAGCAAAATCATTACAGGGTTTAGGAAGGTTTGTAGAGGCGGCAAAATCATGCAAACTAATTTTAGACACTGTTGAATCTTCACTCCCAGAAGGCTTACCTGAAAACTTTGCTAATGATTGTAAATTACAAGAGACATTAACGAAGGCTGTTGACTTACTTCCAGAATTGTGGAAATCTGCGGGTTCTCCAGAAGAATCTATCTTGTCATATAGGCGTGCCCTTCTCTACCAATGGAATCTGGGAATGGAAACCAGAGCAAAGATAGAAAAAGAGTTTGCAATATTCCTTCTCTATAGTGGTTGTAATGCAAGTCCTCCAAATCTTCGTTCACAGATGGAAAGCTCATTTGTGCCAAGAAATAATATGGAAGAGGCCATTCTTCTGTTAATGGATCTGATGAGAAAATTTATACTTGGATTGATTGTATGGGACCCGTCAATAATAGAGCATCTCTCGTTTGCATTGTCTATTTCAGGGGAATTTGGAGCTCTAGCTAATGAGGTTGAACAATTGCCTCCTGGAATTATAGCAACAAAAGAAAAATACTATATCCTAGCACTTTGTTACTATGGGGAAGGTAAAGGCTTAGTTGCATTGAATCTTTTGAAGAACTTCTTGAATAATAAAGAGAACGTTGACTGCTTACTGGAATTGTTGCTGGCTTCAAAGCTCTGTGGAGAAAATTTGGTTTGTCTTGATGAGGGAGTGACATACACATTAAGAGTGCTGTCAGAGCTGCATGGTAAATGCCTCCAGATGGCTTCTCTTGCTAATTGCTTACTTGGTGTGTTATTGTCAGCTATGTCCAAATTTGTTGCTTCAGATTCTCAGAAAACTTTGAAGCAGTCTGAAGCACTCAAGGCGCTACAAACTGCTGAGCAACTGATGAAACAAAGAGATCCATTCATTGTTTACCATCTTTGTCTTGAATATGCTGAACAGAGGAAGCTGGATTTTGCTCTATACTATGCAAAACAGCTAGTGAAACTTGAGGCCGGCTCTAGTATGAAGTCTTACATACTCTTGGCTAGAATATTGTCTGCCCAGAAACGGTTTGTGGATGCGGAGACTGTTCTCAATGCTGCTCTTGAGCAGACAGGGAAGTGGGAACAGGGGGAACTCTTACGAACTAAAGCTAAGCTCCATATTGCCCAGGGCCAGTTAAAGAACGGTATAGAAACATACAGTCATCTTCTTGCTATAATTCAAGTTCAGACCAAAAGTAGTGGAAAGATGCTTCCAAAGGATGTGAGAAAATCTGACAGAAGTCTGGAAGTAGATACATGGCATGACTTAGCCAATATTTACACAAGCTTGTCTCAATGGCGGGATGCTGAGATCTGTCTGTCAAAATTGGAGGCAATCAATCCGTATTCTGCTTCCAAATGGCATTCCACAGGTTTGCTCTACGAGTCGAAGGGTCTTCCACGAGATGCTTTGCAAGCATACAACAAAGCATTGGACATTGATCCTGGCCATGTTCCCAGCTTGATATCAACTGCCTGCCTTCTCCAACAGCTGGGCGGCAGTCAGTCATTTCCTGTGGTGAGAAGCTTGCTGACGGATGCCCTTCGACTAGATCGAGCAAATCCATTGGCATGGTACAGTCTCGGGCTGCTATATAAAGCTGACGCTGGGGCATCGGCGCTGGAGGTTGCTGAATGCTTTGAAGCTGCAACTCTGCTTGAAGAGTCAGCACCAGTTGAACCTTTCAGATGA 2133 41.96 MINCIRSGDQLRVDEMIHSSDSLATRDYSASGFSSRTGEVEQKVDNGNIEEAESSLRESGYLNYEEARALLGRLEYQKGNIEAALHVFEGIDIAAVISRIKASISTRYEQNRRQSQSDVMPTMSMHAISLLLEAIFLKAKSLQGLGRFVEAAKSCKLILDTVESSLPEGLPENFANDCKLQETLTKAVDLLPELWKSAGSPEESILSYRRALLYQWNLGMETRAKIEKEFAIFLLYSGCNASPPNLRSQMESSFVPRNNMEEAILLLMDLMRKFILGLIVWDPSIIEHLSFALSISGEFGALANEVEQLPPGIIATKEKYYILALCYYGEGKGLVALNLLKNFLNNKENVDCLLELLLASKLCGENLVCLDEGVTYTLRVLSELHGKCLQMASLANCLLGVLLSAMSKFVASDSQKTLKQSEALKALQTAEQLMKQRDPFIVYHLCLEYAEQRKLDFALYYAKQLVKLEAGSSMKSYILLARILSAQKRFVDAETVLNAALEQTGKWEQGELLRTKAKLHIAQGQLKNGIETYSHLLAIIQVQTKSSGKMLPKDVRKSDRSLEVDTWHDLANIYTSLSQWRDAEICLSKLEAINPYSASKWHSTGLLYESKGLPRDALQAYNKALDIDPGHVPSLISTACLLQQLGGSQSFPVVRSLLTDALRLDRANPLAWYSLGLLYKADAGASALEVAECFEAATLLEESAPVEPFR 710
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3794249 3797796 - CcPI632755_05g004730.1 Cco05g0473 178101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0473 710 PANTHER PROTEIN NPG1 2 710 IPR043376 -
Cco05g0473 710 SUPERFAMILY TPR-like 511 680 IPR011990 GO:0005515(InterPro)
Cco05g0473 710 Pfam Tetratricopeptide repeat 605 630 IPR019734 GO:0005515(InterPro)
Cco05g0473 710 SUPERFAMILY TPR-like 420 538 IPR011990 GO:0005515(InterPro)
Cco05g0473 710 Gene3D Tetratricopeptide repeat domain 286 550 IPR011990 GO:0005515(InterPro)
Cco05g0473 710 SMART tpr_5 474 507 IPR019734 GO:0005515(InterPro)
Cco05g0473 710 SMART tpr_5 132 165 IPR019734 GO:0005515(InterPro)
Cco05g0473 710 SMART tpr_5 598 631 IPR019734 GO:0005515(InterPro)
Cco05g0473 710 SMART tpr_5 564 597 IPR019734 GO:0005515(InterPro)
Cco05g0473 710 SMART tpr_5 510 543 IPR019734 GO:0005515(InterPro)
Cco05g0473 710 Gene3D Tetratricopeptide repeat domain 551 705 IPR011990 GO:0005515(InterPro)
Cco05g0473 710 ProSiteProfiles TPR repeat profile. 598 631 IPR019734 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0473 Cco-Chr5:3794249 Cco11g1713 Cco-Chr11:29955511 3.70E-162 dispersed
Cco05g0473 Cco-Chr5:3794249 Cco07g0122 Cco-Chr7:1313533 7.30E-243 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0473 K21843 - csv:101206105 1285.01