Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0478 ATGTCGGCTCCATCCACTCGCCGTCTCCGAGATCGCAGTGGCGGATCCGCCGCCACCATCAACCCCTCCAAACCCCTAACTCCAGTTTCCACTTCCAATCGGAAGCTCACTTCCGATTCATCCTCCAGATTTTCGTCGGCTGGGAAAGAGAATCCCAGGTCCACATCTAAGGTTCCGATCATGACCCAAAAGCCCTCGATCCGTGCCGTGCCGCGAGTCAACAAGGCTGCGGCGATTGCTGTTACCGATGCTGAAGGTCGTGCTCGGCGGTCCACGTCTTCGGTTCCGAGAGGTAGGAGTTCTAGTCCTTCTGAGTTTATTAGGGGTTCTGTAGATTCACGTAGGGAGCGGAGGGTTTCGGTTGATCGAGGGAGAGGTTCTGCAGGAGAGAATGATCAAACGGCTTTGGGTAGTGGAAGAGCTTCGCGTGTTAGAGGTTCTGAGAGTGATAAACAGAAAATGGGAGTTAAAGATCTGGATGTGATGGTGAGTGGAGGAGGGCTGGCTGGATTAAGGGTTTATAGGGAGTTGAAGGAAAATGTCAAGCTCAGAACGAATATGGATAGTAAGATTCGGATTTCTGAGGTTAAGCAAACTGCTGATGAGGAAAAAATTGAGGATAAATCACTGGGGATTAAGGTATTGGGAAACCATACTGGGGAAAGTACTGATGAAGCATTAAGAAGGGATGTAAATGGTAAGAGTTCAATGGTTTCTGAGAAAGTACAGAGGGTTTTTGTAGTTAATGAAGAACATAAAGAGAAGCCTTGTATTGTTCCCGAGTTCAGTAGAGCAGATCGTCAAGGGGTTAACTCTAGTTTGGAGTCCACGCAGAAATCTGGGCCGAAGGATTTGGAGATTGTCAAAGAGAGTGGGCAAATTGGAGGAGAGGGGACTTCAAGTTGTGCGGGTAACAAGTATACAAGCAAGCTCCATGAAAAACTTGCTTTTTTGGAGGGTAAGGTAAAGAGGATTGCATCGGATATTAAGAAGACAAAGGAAATGTTGGATTTGAATAATACTTCTTCATCCAAGCTTATACTTTCAGATATTCAGGAGAAGATTTCTGGGATTGAGAAAGCGATTGGACATGGTACAGTAAATTCTGGTGTTAAAGTGGGATTGACGAGTACAAATGAGAGAGATGCCAAAATGGTTACAAAGGATCATACCAATGAAGCAGATATTAACACATCGGTTAAAGGTTTAAATACCAAGGAATTGGAGGAGAGACTATTTCCTCATCATAAATTGCTCAGGAATCGGATGTCAATGAAATCAACATCAGATAGCTCTCAGAGTAATGAAATTCATGCAACTGGACTTAGTCATGTGGTCAAGGTTGAGGATATGCCAATTGATGAGAACCCAATTGCTCTGGAGTTTTTGGCTTCCCTGAATAAGGAGCAAGCAAAAGTCACCTTGAGGAGTGAACAAGTAGGTTTGGAGTTTTGTGAAGTCCAAGAAATGGATGAAAATACTTCTGCAGGATTGCAAGAATCATCAACCCAATTCAAGGGTAAGCAAGAGGCCGAGGTCATTCTCACAAGTGATGAGATTCTTGATGATTTTGATGATCAAGAGAATAAACAGGGAGGCCTGATTGGCGAGGAGACAGATGATGCTGGCATCTACCAGATGAATGAAATAGGCATTAAAACCTCAACAGGTGGATGGTTTGTGTCAGAGGGAGAGGCTGTTCTTCTTGCTCACAACGATGGTTCGTGCTCATTTTACGATATTACTAATACAGAGGAGAAATCTGTATACAAGCCCCCAGCAGGAATCTCACCCAATATCTGGAGGGACTGCTGGATTATACGTGCCCCTGGAGCAGATGGTTGCTCTGGAAGATATGTGGTGGCAGCGTCGGCCGGGAATACGATGGATGCAGGTTTTTGCTCTTGGGATTTTTACAGCAAGAACGTACGAGCTTTCCAGATTGAGGGTGCAATGACCTCTTCAAGGACAGCACTAGCTCCCTTACCCCATAACATTGTGCAAAAGCGATATGCTCCCAGTTATATGCTGGTACCAGAAACGGAACAGTGGTGGTATAAGCCGTGCGGACCTTTGATTGTTTCAACTGCTACCTGTCAAAAGACTGTAAAAGTTTTTGATGTCCGCGACAGTGATGAAATTATGAACTGGGAAGTCCAGAAGCCTGTGGCAGCAATGGATTATTCTAGTCCCTTGCAGTGGAGAAACAGAGGAAAAGTAGTTGTAGCAGAAACAGAAGCCATATCTTTATGGGATGTTGCTTCTACAAGTGCTCAGGCATTGCTCTCCGTTCATTCTCCTGGGCGCAAAATTTCTGCTCTTCACGTGAACAACACAGATGCTGAATTAGGGGGAGGAGTTCGACAAAGAATAAGTTCAGCCGAAGCAGAAGGAAACGATGGTGTATTCTGCACAACAGATTCTGTAAATATTCTGGACTTCCGCAGCCCATCAGGAATAGGCTTAAAGTTGCCAAAAACTAATCTTGGGGCACAATCAGTTTTCACTCGAGGAGATTCTGTGTATGTTGGTTGCTCCAGTGCCAGGTCAGGAGGGAGGAAGCCACAGGCTTCTTCAGTGGTACATCAATTCTCTATTAGAAAACAGGGCCTCTTCTGCACTTATGCATTGCCAGAAAGCAATGCACACGTTCATCATACAGCAGTAACTCAAGTTTGGGGGAATTCAAATCTTGTCATGGCTGTCTGTGGATTGGGGCTGTTTGTATTTGATGCCTTGAATGATGAAGGCTCACAATCCTCCTCTGTTGATACTGAAGGCTCCCAAGTGTTCAGGGAAATTGTTGGTCCAGACGATTTGTATTCGCCTTCTTTCGATTATTCGACGTCTCGAGCACTTCTCATATCAAGGGATCGCCCTGCATTATGGAAACAATTGTCATAG 2904 45.04 MSAPSTRRLRDRSGGSAATINPSKPLTPVSTSNRKLTSDSSSRFSSAGKENPRSTSKVPIMTQKPSIRAVPRVNKAAAIAVTDAEGRARRSTSSVPRGRSSSPSEFIRGSVDSRRERRVSVDRGRGSAGENDQTALGSGRASRVRGSESDKQKMGVKDLDVMVSGGGLAGLRVYRELKENVKLRTNMDSKIRISEVKQTADEEKIEDKSLGIKVLGNHTGESTDEALRRDVNGKSSMVSEKVQRVFVVNEEHKEKPCIVPEFSRADRQGVNSSLESTQKSGPKDLEIVKESGQIGGEGTSSCAGNKYTSKLHEKLAFLEGKVKRIASDIKKTKEMLDLNNTSSSKLILSDIQEKISGIEKAIGHGTVNSGVKVGLTSTNERDAKMVTKDHTNEADINTSVKGLNTKELEERLFPHHKLLRNRMSMKSTSDSSQSNEIHATGLSHVVKVEDMPIDENPIALEFLASLNKEQAKVTLRSEQVGLEFCEVQEMDENTSAGLQESSTQFKGKQEAEVILTSDEILDDFDDQENKQGGLIGEETDDAGIYQMNEIGIKTSTGGWFVSEGEAVLLAHNDGSCSFYDITNTEEKSVYKPPAGISPNIWRDCWIIRAPGADGCSGRYVVAASAGNTMDAGFCSWDFYSKNVRAFQIEGAMTSSRTALAPLPHNIVQKRYAPSYMLVPETEQWWYKPCGPLIVSTATCQKTVKVFDVRDSDEIMNWEVQKPVAAMDYSSPLQWRNRGKVVVAETEAISLWDVASTSAQALLSVHSPGRKISALHVNNTDAELGGGVRQRISSAEAEGNDGVFCTTDSVNILDFRSPSGIGLKLPKTNLGAQSVFTRGDSVYVGCSSARSGGRKPQASSVVHQFSIRKQGLFCTYALPESNAHVHHTAVTQVWGNSNLVMAVCGLGLFVFDALNDEGSQSSSVDTEGSQVFREIVGPDDLYSPSFDYSTSRALLISRDRPALWKQLS 967
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3856841 3860364 - CcPI632755_05g004780.1 Cco05g0478 178106

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0478 967 MobiDBLite consensus disorder prediction 87 108 - -
Cco05g0478 967 Gene3D - 555 818 IPR015943 GO:0005515(InterPro)
Cco05g0478 967 SUPERFAMILY WD40 repeat-like 563 779 IPR036322 GO:0005515(InterPro)
Cco05g0478 967 MobiDBLite consensus disorder prediction 1 153 - -
Cco05g0478 967 MobiDBLite consensus disorder prediction 16 62 - -
Cco05g0478 967 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 1 966 IPR045289 -
Cco05g0478 967 MobiDBLite consensus disorder prediction 109 125 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0478 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g739 . . . . . Bpe14g01267 . . . . Cma06g01311 Cma14g01824 Car06g01125 Car14g01636 . Cpe08g00344 Cpe03g01527 Bhi01g00709 . . . Hepe05g1670 . . . . . . . . . . . Cone7ag0335 Cone4ag0342 Lsi05g01747 . . Cme06g00475 Blo02g00757 Blo07g00273 Bda11g00641 Bda13g00051 . Bpe13g00547 . Bma06g01607 . Cmo06g01319 Cmo14g01865 . . . . . . . . . . . . . Cla05g00431 Cam05g0469 Cec05g0478 Cco05g0478 Clacu05g0466 Cmu05g0445 Cre05g0506 . Csa03g01193 Chy06g00457 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006299 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 38