Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0490 ATGGGCCTTCTTAAAATTTCATCGGCCCAACTCATAGGAGTTCCTTTGAAAAGCCCATTACCGTTCGCTTCATTATCTGTTAACGAGTCGACTTGTCGTACATATTCAGCAACGAAACCAAGTCCCTCCTCTCCGTTCTCCAAGTCAACGGGATCTGAAAATGGTCAAGGAAGAAGATTAACTGCGAAAGACGACATGTCGTTCATAAAATCCAGGAACGACATATCGCACGAAACTCCATTGAAATTCATTTCTCAGAAACAGGGCTGGGAGTTTGGGCTGCTCCCATTGCTGCAGAGGGGTCTTGAATTGAATTTTCCAGGGAGATTTTTAGGCCAAATCCTGGATGAACTGCTGTATCAGCAAGTTACCTATGGCAACACAGAAGGGATCAAAGCCCTTTGCCGAGAGGGTGCAGGTCTTGAGTGGATTGATAAGGAGGCGAAAACCCCTTTGATTGTGGCCTGCATGAGTCCTGAGCTTCACAATGTCGCCAGAACTTTGATAGAACTTGGTGCAAATGTTAATGCTTATCGGCCTGGACGTCATGCTGGCACTCCTTTACATCATGCAGCTAAAAGAGGTCTTGAAAATAATGTCAAGTTACTTCTTTCTCATGGAGCAAATCCTTTGATCATGAATGATGATTGTCAGAGTCCTCTTGATGTTGCTAGAGCAAAAGGTCACAGCAATGTCGTTCGTACAATTGAGAGTCATATTTGTTTGTTCTCGGGTTGGTTGCGGGAATTCTATGGACCAGGATTTTTGGAACTATTGGCTCCTCAATTGGTCTCGAGGAAAGTTTGGGCTGTTATTTTACCATGTGGGGCACGAAACCTTACAAAGCCTTTCAAGTTGGAGCTTGCAATCTACACAACTCTACAGGATGCTCAACCACGTATTGTTGTTCCACTGTGGAGAGCCGATTTGGAGCAGTCGAAGTTACAGCATTCTGATCCATCAGTTATGATTGTGGATAACGCCACAAAAACTCGCTTGAAACTTGCATCTGGGAATGAAAATGACAAGGAACAACTTCAGTGGTTTTGCAATGCATGCAAAGGAATTCCTTCGATGATGCACCCCACATTTATGAATGGTAACCATGGTTCGGGTGTTTCGGCAACTGCACCACCAGACTCAGAAGATGTGGAGCTAGCCATGGCCATTAATGCTTCCATCCAGTCAGCTATCCATGGGAGACCACCCTTTCCCGATCCCAACCAAAGTTCTGAAGCAAGTACCTCTAGTAGCCATACAGGTCCAGTTGCACCGACAACACATTCTACAAGATTAGGCTCTAATGAATCAGAAGTGCATGAAGCTGGAAAGAGCAGCACTTCGAACGAACATCCTCAAATCCAGACTAACACCATCATCCCTCCAGATGCAGTACCTTCAGCTCCATTGGCAGCTGATGAAATTATGGATGATGGTGCAATTCACTATCCTTCAATCGATACAAGTCCCATTGACTTGTCATCTCAAACTGCTCAGAACGTTCCCTTTCGAGCTGGTGAAGGAAAAGAGGAAACGAGTTCATCATGTGTTATATGTTTGGATGCTCCTATTCAAGGAGCCTGCATTCCCTGTGGACATATGGCTGGGTGTATGAATTGCTTGACCGAAATCAAATTGAAGAAATGGGGATGCCCAGTTTGTCGCGCCAAAATTGACCAGGTTGTCAGATTGTATGCTGTATGA 1704 44.89 MGLLKISSAQLIGVPLKSPLPFASLSVNESTCRTYSATKPSPSSPFSKSTGSENGQGRRLTAKDDMSFIKSRNDISHETPLKFISQKQGWEFGLLPLLQRGLELNFPGRFLGQILDELLYQQVTYGNTEGIKALCREGAGLEWIDKEAKTPLIVACMSPELHNVARTLIELGANVNAYRPGRHAGTPLHHAAKRGLENNVKLLLSHGANPLIMNDDCQSPLDVARAKGHSNVVRTIESHICLFSGWLREFYGPGFLELLAPQLVSRKVWAVILPCGARNLTKPFKLELAIYTTLQDAQPRIVVPLWRADLEQSKLQHSDPSVMIVDNATKTRLKLASGNENDKEQLQWFCNACKGIPSMMHPTFMNGNHGSGVSATAPPDSEDVELAMAINASIQSAIHGRPPFPDPNQSSEASTSSSHTGPVAPTTHSTRLGSNESEVHEAGKSSTSNEHPQIQTNTIIPPDAVPSAPLAADEIMDDGAIHYPSIDTSPIDLSSQTAQNVPFRAGEGKEETSSSCVICLDAPIQGACIPCGHMAGCMNCLTEIKLKKWGCPVCRAKIDQVVRLYAV 567
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3921048 3925685 - CcPI632755_05g004900.1 Cco05g0490 178118

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0490 567 ProSiteProfiles Ankyrin repeat profile. 147 180 IPR002110 GO:0005515(InterPro)
Cco05g0490 567 Pfam Zinc finger, C3HC4 type (RING finger) 514 561 - -
Cco05g0490 567 SUPERFAMILY RING/U-box 509 561 - -
Cco05g0490 567 Gene3D - 61 241 IPR036770 -
Cco05g0490 567 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 493 566 IPR013083 -
Cco05g0490 567 ProSiteProfiles Zinc finger RING-type profile. 516 555 IPR001841 -
Cco05g0490 567 ProSiteProfiles Ankyrin repeat profile. 183 215 IPR002110 GO:0005515(InterPro)
Cco05g0490 567 MobiDBLite consensus disorder prediction 439 462 - -
Cco05g0490 567 MobiDBLite consensus disorder prediction 35 59 - -
Cco05g0490 567 MobiDBLite consensus disorder prediction 35 57 - -
Cco05g0490 567 MobiDBLite consensus disorder prediction 407 433 - -
Cco05g0490 567 SUPERFAMILY Ankyrin repeat 118 241 IPR036770 -
Cco05g0490 567 MobiDBLite consensus disorder prediction 397 466 - -
Cco05g0490 567 SMART ANK_2a 147 177 IPR002110 GO:0005515(InterPro)
Cco05g0490 567 SMART ANK_2a 183 212 IPR002110 GO:0005515(InterPro)
Cco05g0490 567 SMART ANK_2a 216 245 IPR002110 GO:0005515(InterPro)
Cco05g0490 567 ProSiteProfiles Ankyrin repeat region circular profile. 147 177 - -
Cco05g0490 567 ProSiteProfiles Ankyrin repeat region circular profile. 183 209 - -
Cco05g0490 567 CDD RING-HC_XBAT35-like 516 565 - -
Cco05g0490 567 PANTHER ROLLING PEBBLES, ISOFORM B 430 565 IPR050889 -
Cco05g0490 567 Pfam Ankyrin repeat 186 214 IPR002110 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0490 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0490 Cco-Chr5:3921048 Cco06g0731 Cco-Chr6:8333698 7.60E-142 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g717 . . . . . Bpe14g01258 . . . Cmo17g00160 Cma06g01318 Cma14g01815 Car06g01136 . . . . . . . . . . . Cla06g00667 Cam06g0716 . Cco06g0731 Clacu06g0707 Cmu06g0694 Cre06g1464 . . . . Lsi05g01735 Csa02g01059 Chy05g00319 Cme06g00486 . Blo07g00266 Bda11g00635 Bda13g00059 . . Bma02g00778 . . Cmo06g01328 Cmo14g01854 . Cma17g00162 . Car17g00143 . . Bhi12g01615 . . . . . Lcy13g0378 Cla05g00442 Cam05g0480 Cec05g0490 Cco05g0490 Clacu05g0476 Cmu05g0455 Cre05g0517 Lsi09g01232 Csa03g01204 Chy06g00467 Cme05g00571
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002162 2 4 2 1 1 2 3 2 2 2 2 2 3 2 2 3 2 2 1 2 2 2 2 2 2 2 2 3 2 2 63