Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0498 ATGGCTCAAGAACTGGGAGTTCTAAATGCACTTGATGTTGCAAAGACCCAATGGTACCATTTCACAGCCATCATCATAGCTGGAATGGGGTTCTTCACCGATGCCTACGATCTTTTTTGCATTGCGGTCGTGTCGAAGTTGATTGGTCGCATATACTACTACACACCAGGGTCGGGGCGGCCGGGGTCGCTTCCTCCAAACGTGTCGGCGGCAGTGAGTGGCGTGGCGCTTTGTGGAACTCTGAGCGGGCAACTGTTTTTCGGGTGGCTGGGTGACAAGATGGGAAGGAAGAAAGTGTATGGGATAACGTTGATTCTGATGGTGATATGTTCATTTGGGTCAGGGCTAAGTTTTGGGCACTCGGCCAAAGCAACATTGACAACATTATGTCTATTTCGGTTCTGGCTTGGGTTTGGGATTGGTGGTGATTATCCACTTTCCGCAACAATTATGTCCGAATATGCAAATAAGAAAACTCGTGGGGCTTTTATAGCAGCTGTTTTTGCCATGCAAGGTTTCGGAATTTTGGCTGGTGGAATCGTCGCTTTGATTGTTTCAGCTGCATTCAATAATAGATTCCCAGCTCCCTCATATGAGATTGACGCGGTGGGGTCAACCGTACCAGAGGCGGACTATGTATGGCGCATAGTTCTAATGTTTGGCGCCATCCCTGCCGGAATGACATACTACTGGCGTATGAAGATGCCGGAAACAGCCCGTTACACTGCTCTAGTGGCGAAGAATGCGAAACAAGCCGCGGCGGACATGTCGAAAGTGTTACAAGTAGAGGTGGAGGCAGAGGAAGAGAAGCTAGAGAAGATAGTAAGCACAACCAGAAACAACTTTGGCTTGTTTTCCAAACAGTTCCTCAAACGCCATGGCCTCCACTTGCTTGGAACCACAAGCACTTGGTTCTTACTCGACATTGCATTTTACAGCCAAAATCTCTTCCAAAAAGACATCTACACTGCAATTGGTTGGCTCCCTCCCGCAAAAACAATGAGCGGCCTCGAGGAGTGCTATCGTATCGCCAAGGCTCAGACGCTGATTGCACTTTGTGGGACTGTGCCCGGCTATTGGTTCACCGTGGCTCTGATTGATATTATTGGTAGATTCACTATCCAATTAATTGGGTTCATTATGATGACTATTTTCATGTTTGCCATTGCCATCCCTTACAACCATTGGATTTTGAAAGAGAATCGAATTGGGTTTGTGGTCATGTATTCCTTGACCTTCTTCTTCGCCAATTTTGGGCCTAATTCCACTACTTTCATTGTTCCTGCTGAAATATTCCCGGCAAGACTTAGGTCCACATGTCACGGCATCTCTGCTGCCGCCGGCAAGGCTGGTGCAATCATTGGTGCTTTTGGGTTCTTGTATGCAGCGCAGAATCCTGACCCGACAAAAACTGACCCAGGTTACCCACCGGGTATTGGTGTTAAGAACTCTCTTATTGCACTTGGTTGCATCAACTTCCTTGGTGGTTTACTCACCTTGTTAGTGCCCGAACCTAAAGGAAAATCACTTGAGGAGTTGACCGGAGAGAACGAGGCGCCGGAAGAAAATGTCGTCGGGCAACCACAAGTGTGA 1593 47.9 MAQELGVLNALDVAKTQWYHFTAIIIAGMGFFTDAYDLFCIAVVSKLIGRIYYYTPGSGRPGSLPPNVSAAVSGVALCGTLSGQLFFGWLGDKMGRKKVYGITLILMVICSFGSGLSFGHSAKATLTTLCLFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAAFNNRFPAPSYEIDAVGSTVPEADYVWRIVLMFGAIPAGMTYYWRMKMPETARYTALVAKNAKQAAADMSKVLQVEVEAEEEKLEKIVSTTRNNFGLFSKQFLKRHGLHLLGTTSTWFLLDIAFYSQNLFQKDIYTAIGWLPPAKTMSGLEECYRIAKAQTLIALCGTVPGYWFTVALIDIIGRFTIQLIGFIMMTIFMFAIAIPYNHWILKENRIGFVVMYSLTFFFANFGPNSTTFIVPAEIFPARLRSTCHGISAAAGKAGAIIGAFGFLYAAQNPDPTKTDPGYPPGIGVKNSLIALGCINFLGGLLTLLVPEPKGKSLEELTGENEAPEENVVGQPQV 530
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3986016 3988380 - CcPI632755_05g004980.1 Cco05g0498 178126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0498 530 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 8 512 - -
Cco05g0498 530 Pfam Sugar (and other) transporter 25 513 IPR005828 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
Cco05g0498 530 SUPERFAMILY MFS general substrate transporter 11 513 IPR036259 -
Cco05g0498 530 Gene3D MFS general substrate transporter like domains 270 528 IPR036259 -
Cco05g0498 530 Gene3D MFS general substrate transporter like domains 19 266 IPR036259 -
Cco05g0498 530 ProSiteProfiles Major facilitator superfamily (MFS) profile. 23 507 IPR020846 GO:0022857(InterPro)
Cco05g0498 530 NCBIfam phosphate:H+ symporter 10 516 IPR004738 GO:0005315(InterPro)|GO:0006817(InterPro)|GO:0016020(InterPro)
Cco05g0498 530 FunFam Inorganic phosphate transporter 1-6 19 526 - -
Cco05g0498 530 CDD MFS_PhT 24 506 - -
Cco05g0498 530 MobiDBLite consensus disorder prediction 509 530 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0498 Cco-Chr5:3986016 Cco06g0725 Cco-Chr6:8259503 3.60E-255 dispersed
Cco05g0497 Cco-Chr5:3970309 Cco05g0498 Cco-Chr5:3986016 2.60E-229 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0498 K08176 - csv:101213007 974.541