Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0500 ATGGATTACTCTGGATTCTTCTCCCCGGTTTCCGATTTCTCCTCCGAATCATCGTTCGGTTCACCAGAATCATCCTTCATGAATTTGGACCACAATTTTCTTCCTTTCAATGAGAATGACTCAGAGGAAATGCTTCTGTATGGCCTAATCTCCGAGGGGACACAGGATTCCTCCGACAACAGTATCGGAACGGCGCGAGTGAAGGAAGAGGAAGTCGATTCGATCGGTGAAGAAAGCCCAAAGAAGGAGAGGGCTTACAGGGGAGTTCGCCGCCGGCCATGGGGCAAATTTGCGGCGGAAATTAGAGATTCTACTAGACATGGTATAAGGGTATGGTTAGGAACTTTCGACAGTGCCGAAGCGGCCGCTTTGGCTTACGATCAAGCCGCCTTTTCAATGAGGGGTGCCGCCGCAATTCTCAATTTTCCCGTCGACAGAGTTAGGGAGTCTCTCAAAGAAATGAATTGCAGTGGCGGCGGCAGTGATAGTATAGCTGAGGACGGCGGCTCTCCGGTGGTGGCGTTGAAAAGAAAACACTCGATTAGAAGGAAAGCCATAAGCAAAAAGAGCAAAGAGAGAGATGTGAGGATCCAAAATGTGGTGGTTTTGGAAGATTTAGGAGCAGAGTATTTGGAAGAACTTTTGGGCACTTCACAAAGTGGTAGCCCTTGTTCTTTCTAA 681 48.31 MDYSGFFSPVSDFSSESSFGSPESSFMNLDHNFLPFNENDSEEMLLYGLISEGTQDSSDNSIGTARVKEEEVDSIGEESPKKERAYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEAAALAYDQAAFSMRGAAAILNFPVDRVRESLKEMNCSGGGSDSIAEDGGSPVVALKRKHSIRRKAISKKSKERDVRIQNVVVLEDLGAEYLEELLGTSQSGSPCSF 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4003503 4004183 - CcPI632755_05g005000.1 Cco05g0500 178128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0500 226 MobiDBLite consensus disorder prediction 63 84 - -
Cco05g0500 226 PANTHER DNA-BINDING DOMAIN 56 185 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
Cco05g0500 226 ProSiteProfiles AP2/ERF domain profile. 85 143 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g0500 226 SUPERFAMILY DNA-binding domain 85 144 IPR016177 GO:0003677(InterPro)
Cco05g0500 226 Gene3D AP2/ERF domain 85 145 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g0500 226 Pfam AP2 domain 86 135 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g0500 226 MobiDBLite consensus disorder prediction 8 23 - -
Cco05g0500 226 MobiDBLite consensus disorder prediction 53 84 - -
Cco05g0500 226 FunFam Ethylene-responsive transcription factor 2 84 145 - -
Cco05g0500 226 CDD AP2 86 145 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g0500 226 PRINTS Ethylene responsive element binding protein signature 109 125 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g0500 226 PRINTS Ethylene responsive element binding protein signature 86 97 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco05g0500 226 MobiDBLite consensus disorder prediction 1 23 - -
Cco05g0500 226 SMART rav1_2 85 149 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0500 Cco-Chr5:4003503 Cco06g0716 Cco-Chr6:8060725 7.10E-67 dispersed
Cco05g0500 Cco-Chr5:4003503 Cco05g0501 Cco-Chr5:4029392 5.70E-16 tandem
Cco05g0500 Cco-Chr5:4003503 Cco06g0166 Cco-Chr6:1701612 2.20E-15 wgd
Cco05g0500 Cco-Chr5:4003503 Cco06g0714 Cco-Chr6:8002516 1.90E-19 wgd
Cco05g0500 Cco-Chr5:4003503 Cco07g0101 Cco-Chr7:1034172 1.30E-41 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59220 PF00847 AP2 2.60E-14 CL0081 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0500 K14516 - csv:101210326 355.14