Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0504 ATGAAGATCATGGTCGCCATTAAGCGAGTCGTCGATTACGCCGTCAAAATCCGTGTTAAACCGGACAGAACGGGCGTTGAGACCCAGAATGTCAAAATGTCGATGAACCCCTTTTGCGAGATTGCAATCGAGGAAGCCCTGCGTATCAAGGAGGCTGGCTTCGCCTCTGAGGTTGTGGCGGTCAGCATGGGTCCGGCTCAGTGCGTCGACACTCTCAGGACGGGCCTAGCGATGGGCGCTGACAGGGGCATTCATGTGGAAGCCACTGCCCCCCTTTATCCTCTCTCTGTTGCTAAGCTTTTGAAGGCCCTTGTTGAGGTTGAGAAGCCTGGCCTTCTTTTACTAGGCAAACAGGCTATTGATGATGATTGTAACCAAACCGGGCAGATGATTGCAGGTCTTCTGAACTGGCCTCAAGGGACTTTTGCTTCGAAGGTTGTGATAGACAAGGAGAAGCAGGCAGTGACAGTGGACAGAGAAGTGGATTGTGGTCTTGAGACCCTCTGTTTGGACTTACCAGCCGTAATCACAACTGATTTGAGGCTGAATCAACCGAGGTATGCTACACTCCCAAACATAATGAAAGCGAAATCAAAACCCATAAAGAAGTTCACTCCACAGGAATTAAATGTGGATGTGAAGCCAGATTTGGAGGTCGTTGAAGTTACGGAACCTCCAAAAAGAAAAGCGGGCATCATATTGTCCTCTGTTGATGAACTGATTGACAAACTCAAAAATGAAGCTCATAGGGGTGCGGCGGTGGACGACGCTTTCATTCCAGATCAGATGGATCCCTTAGAGGATTCTAGTTGTTGGGATTTTCTTGATTGCTCCTTCTTCGTCGACGGTGACAATCTTATTAACACTTCGCTCGATCCTTTGTGGCCGCCTAATGATTCTAGGGATAGTTGTGCGGAGACTGATGTTTCAGCTGGGCGTGTTGAGCCTGAAGAAAACGAGTGTTCGCGGAAGAGGGCACGAGATGGGTCGTGCGCTGGACCAACTTCGAAAGCTTGTCGCGAGAGGTTGCGGAGGGAGAAATTAAATGATAGGTTTCTAGATTTGAGCATTGCTTTAGAACCTAGTAGACCTACCAAAACTAACAAGCCGGCCATACTTGATGATGCCATTAGAGTGTTAAATCAACTTAAGAATGAAGCCGAAGACCTCAAACAAACTAATGAAAAGTTACGAGAAGAAGTGGAGTGTTTAAAGGCAGAGAAGAACGATCTTCGGAAAGAGAAAATCATTCTGAAGGAAGACAAAAAACGAATCGAACAACAGTTGAAATCTGTAGCCGTTCCACCTCCAGGGCTTATTCCTGGTCATCCAGCTGCATATCATGCTGCTCCAGGTAAGATGGCTGTTTTTCCTGGTTATGGTCTGATCCCAATGTGGCAATATCTTCCTCCATCAGTACGAGATACATCTCAAGATCATGAGCTCAGGCCCCCTGCTGCATAG 1464 47.47 MKIMVAIKRVVDYAVKIRVKPDRTGVETQNVKMSMNPFCEIAIEEALRIKEAGFASEVVAVSMGPAQCVDTLRTGLAMGADRGIHVEATAPLYPLSVAKLLKALVEVEKPGLLLLGKQAIDDDCNQTGQMIAGLLNWPQGTFASKVVIDKEKQAVTVDREVDCGLETLCLDLPAVITTDLRLNQPRYATLPNIMKAKSKPIKKFTPQELNVDVKPDLEVVEVTEPPKRKAGIILSSVDELIDKLKNEAHRGAAVDDAFIPDQMDPLEDSSCWDFLDCSFFVDGDNLINTSLDPLWPPNDSRDSCAETDVSAGRVEPEENECSRKRARDGSCAGPTSKACRERLRREKLNDRFLDLSIALEPSRPTKTNKPAILDDAIRVLNQLKNEAEDLKQTNEKLREEVECLKAEKNDLRKEKIILKEDKKRIEQQLKSVAVPPPGLIPGHPAAYHAAPGKMAVFPGYGLIPMWQYLPPSVRDTSQDHELRPPAA 487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4055064 4062458 + CcPI632755_05g005040.1 Cco05g0504 178132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0504 487 FunFam Electron transfer flavoprotein subunit beta 1 250 - -
Cco05g0504 487 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 1 244 - -
Cco05g0504 487 Coils Coil 373 428 - -
Cco05g0504 487 Pfam Electron transfer flavoprotein domain 26 207 IPR014730 -
Cco05g0504 487 MobiDBLite consensus disorder prediction 298 335 - -
Cco05g0504 487 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 335 403 IPR036638 GO:0046983(InterPro)
Cco05g0504 487 CDD bHLH_AtILR3_like 337 412 - -
Cco05g0504 487 Gene3D HUPs 1 249 IPR014729 -
Cco05g0504 487 SMART finulus 338 389 IPR011598 GO:0046983(InterPro)
Cco05g0504 487 Pfam Helix-loop-helix DNA-binding domain 336 384 IPR011598 GO:0046983(InterPro)
Cco05g0504 487 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 332 383 IPR011598 GO:0046983(InterPro)
Cco05g0504 487 SMART ETF_2 23 213 IPR014730 -
Cco05g0504 487 CDD ETF_beta 2 205 IPR033948 -
Cco05g0504 487 PANTHER ELECTRON TRANSFER FLAVOPROTEIN BETA-SUBUNIT 1 249 IPR012255 GO:0005739(PANTHER)|GO:0009055(PANTHER)|GO:0009055(InterPro)|GO:0009063(PANTHER)|GO:0033539(PANTHER)
Cco05g0504 487 Gene3D - 335 416 IPR036638 GO:0046983(InterPro)
Cco05g0504 487 MobiDBLite consensus disorder prediction 306 327 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0510 Cco-Chr3:5255238 Cco05g0504 Cco-Chr5:4055064 8.00E-21 dispersed
Cco05g0504 Cco-Chr5:4055064 Cco10g0542 Cco-Chr10:6492922 6.30E-28 dispersed
Cco05g0504 Cco-Chr5:4055064 Cco05g1689 Cco-Chr5:24706954 2.60E-29 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59223 PF01012 ETF 3.30E-43 CL0039 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0504 K03521 - csv:101210570 474.167