Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0522 ATGATGGGTTGGGTGGGATTGTCCGGGGTTGATCATCATCACCCGGCTGCGATCAACAACTCTCCCATCTTCAAACAAAGCGATGAAAACAGCGGCGGCAGCAGAGACGACGACGACGACGACAACAACCGCGATGAGCCTAAAGAAGGCGCGGTGGAAGCCGGAACACGGAGGCCAAGAGGCCGTCCACCTGGATCTAAAAACAAACCCAAACCCCCGATCTTCGTCACACGCGACAGTCCCAACGCCCTTCGGAGCTACGTCCTAGAGGTAGCTGCCGGATCCGACGTGGCCGATTCCATCGCTCAATTCGCCCGTAAACGCCAGCGTGGCGTCTGCGTCCTCAGTGCAACCGGCTTAGTCGCTAACGTCACCTTACGTCAGCCCGCTGCTCCCGGTTCCGTAATGCCACTCCAAGGAAGGTTTGAGATTCTATCTTTAACCGGCGCTTTTTTACCCGGTCCGGCCCCACCTGGCTCTACTGGCCTCACCGTTTACTTGTCCGGCGGTCAGGGCCAGGTCGTCGGTGGGAGCGTCGTTGGCTCGCTTGTGGCTGCCGGACCCATTATGGTAATTGCAGCCACTTTTGCTAATGCCACTTATGAAAGGTTGCCTCTTGAAGATCCCGACGACCACGAAGTTGGAAGTGGCTCCGCCTCACACGGCGGTCCTAGAAGTCCACCGCCCGAAATTAGAGCCACTGGAGGAGGGCAGATGCCGCCTGGGATGCCGGAACCCACTTTGCCGTTGTATAATTTACTGCCGGATATGATTCCCAACGGTGTTCAGCTTGGTCACGACGGGTATGCTTATGTCCGGCCGCCGTATTGA 831 57.52 MMGWVGLSGVDHHHPAAINNSPIFKQSDENSGGSRDDDDDDNNRDEPKEGAVEAGTRRPRGRPPGSKNKPKPPIFVTRDSPNALRSYVLEVAAGSDVADSIAQFARKRQRGVCVLSATGLVANVTLRQPAAPGSVMPLQGRFEILSLTGAFLPGPAPPGSTGLTVYLSGGQGQVVGGSVVGSLVAAGPIMVIAATFANATYERLPLEDPDDHEVGSGSASHGGPRSPPPEIRATGGGQMPPGMPEPTLPLYNLLPDMIPNGVQLGHDGYAYVRPPY 276
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4163597 4165179 + CcPI632755_05g005220.1 Cco05g0522 178150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0522 276 PIRSF ESCAROLA 6 274 IPR014476 GO:0003680(InterPro)
Cco05g0522 276 Gene3D - 84 213 - -
Cco05g0522 276 MobiDBLite consensus disorder prediction 207 246 - -
Cco05g0522 276 ProSiteProfiles PPC domain profile profile. 81 222 IPR005175 -
Cco05g0522 276 MobiDBLite consensus disorder prediction 15 79 - -
Cco05g0522 276 FunFam AT-hook motif nuclear-localized protein 84 212 - -
Cco05g0522 276 CDD DUF296 85 167 IPR005175 -
Cco05g0522 276 SUPERFAMILY AF0104/ALDC/Ptd012-like 82 209 - -
Cco05g0522 276 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 31 269 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cco05g0522 276 Pfam Plants and Prokaryotes Conserved (PCC) domain 85 197 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0522 Cco-Chr5:4163597 Cco07g0348 Cco-Chr7:3666747 7.30E-66 dispersed
Cco02g1816 Cco-Chr2:31046943 Cco05g0522 Cco-Chr5:4163597 4.40E-77 wgd
Cco05g0522 Cco-Chr5:4163597 Cco06g0700 Cco-Chr6:7843527 6.00E-60 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0522 - - - 0.0