Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0526 ATGAAACTTTCTCGTCTAAATTCCCTCCGGCGAGTTCAGTCCGGCGAGCTTATCATGAAGCTCCCCGACGACCACGACGATTCCAAAAGACCCCAATTCCCTCTCGATTCCACCTCTTACAAAATCATCGACGAAATTGGGATCGGCGTCAGCGCCGTCGTGTACAAAGCTATCTGCATTCCGATGAATTCTGCAGTTGTGGCCATCAAAGCCATCGATCTCGATCGATCACGAGCCGATTTCGATGACATTCGAAGAGAAGCTAAAATTCTCTCACTTCTCTCTCACCCCAATATTCTAAATGCTCACTGTTCTTTCACCGTCGATCGTCGTCTTTGGGTCGTAATGCCGTTCATGTCAGCTGGATCTTTACAGTCCATTATTACGTCGTCGTTTCCCGATGGCTTGCCGGAGCCCTGTATCGCCGTTGTTCTCCGGGAAATTCTACACGCTCTGTCTTACCTCCACGACCAAGGCCATCTCCACCGTGATATTAAAGCCGGCAACATTCTGATAGACTCAAATGGGTCTGTCAAGCTGGCTGATTTTGGAGTTTCGGCGTCGATTTTTGAGGCGAATTCAAAACAGGGGGTGTCAATTTCTCCACTATCGACATCGATGATGCTGAAGGAAGTCGCCGGAACGCCGTACTGGATGGCGCCGGAGGTGATTCACTCCCACAATGGGTATAGTTTGAAAGCGGATATATGGTCATTTGGAATCACGGCGTTGGAATTAGCCCATGGACGACCTCCTCTGTCTCATCTCCCTCCTTCCAAATCCCTGCTTCTGAAAATCACGCGGAGGTTTCGATTCTCCGATTACGAGAACCACCGCAACTGCAAGAACAAGAACAAATTCTCAAAAGGGTTTAAGGAATTGGTAGCCTCTTGCCTCGATCAAGAGCCATCGAGAAGACCCTGCGCTGAGAAATTGCTCAAACATCCGTTCTTCAAAAACTGCAAGGGACCTGATCTTCTCGTAAAGACAATATTACAAGGTCTACCCAGCGTTGAGGAGCGATTCAAATTGGGGAAATTACAGCGATTGCCGTCGATGAAAACTGAGGAAGACGAGGAGGAAGAAGAATTAGAGAAGGAGATTATAAAACAGAGGAGGATAAGTGGGTGGAATTTCAATGAGGATGGACTAGAGCTGGACCCTGTTTTTCCAGGGGAAAACTGCGAGGAAGAATGCTCGATCATAGAGGAGAAGGGTTCGGGGGATTTGAGCGAGTGGTGTTCTGGGTTGTCGGATCTAAGTTCGCCGGTGGGGAACGAGAGGGGCGGCGGGGAATCGATAGTGGGGGGATTGGTGGCGCTGAAAAGGAGCTTAGACGAGCAGAGGAGGGCGGTGGGGAGTTTGATAGAGCTGATAGAAGGGGAGAAAGGGGGAGAGATGAGCAGAGAGGAACAGATGGGGAGATTGATGGAGAAGATGACGAAGGAGTTGGAGAATGAGAGGAAGAGGAACTTTGAATTGGAAATGGAGTTGGAATTTCTTAGGCTTCAGATTTCTGCTGCTTATAATAATAATAATAATAATAATAATAATAATAATAATAATAATGGCGGTGGTGGTGCTTCAACCGCCATTAATAACTGA 1605 47.79 MKLSRLNSLRRVQSGELIMKLPDDHDDSKRPQFPLDSTSYKIIDEIGIGVSAVVYKAICIPMNSAVVAIKAIDLDRSRADFDDIRREAKILSLLSHPNILNAHCSFTVDRRLWVVMPFMSAGSLQSIITSSFPDGLPEPCIAVVLREILHALSYLHDQGHLHRDIKAGNILIDSNGSVKLADFGVSASIFEANSKQGVSISPLSTSMMLKEVAGTPYWMAPEVIHSHNGYSLKADIWSFGITALELAHGRPPLSHLPPSKSLLLKITRRFRFSDYENHRNCKNKNKFSKGFKELVASCLDQEPSRRPCAEKLLKHPFFKNCKGPDLLVKTILQGLPSVEERFKLGKLQRLPSMKTEEDEEEEELEKEIIKQRRISGWNFNEDGLELDPVFPGENCEEECSIIEEKGSGDLSEWCSGLSDLSSPVGNERGGGESIVGGLVALKRSLDEQRRAVGSLIELIEGEKGGEMSREEQMGRLMEKMTKELENERKRNFELEMELEFLRLQISAAYNNNNNNNNNNNNNNGGGGASTAINN 534
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4222715 4224319 - CcPI632755_05g005260.1 Cco05g0526 178154

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0526 534 MobiDBLite consensus disorder prediction 512 534 - -
Cco05g0526 534 Coils Coil 354 374 - -
Cco05g0526 534 FunFam Serine/threonine-protein kinase BLUS1 29 118 - -
Cco05g0526 534 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 32 506 IPR047173 GO:0043539(InterPro)|GO:1902456(PANTHER)
Cco05g0526 534 SMART serkin_6 40 318 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco05g0526 534 ProSiteProfiles Protein kinase domain profile. 40 318 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco05g0526 534 ProSitePatterns Protein kinases ATP-binding region signature. 46 70 IPR017441 GO:0005524(InterPro)
Cco05g0526 534 Gene3D Phosphorylase Kinase; domain 1 29 118 - -
Cco05g0526 534 Pfam Protein kinase domain 40 318 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco05g0526 534 Coils Coil 470 504 - -
Cco05g0526 534 Gene3D Transferase(Phosphotransferase) domain 1 122 371 - -
Cco05g0526 534 SUPERFAMILY Protein kinase-like (PK-like) 39 335 IPR011009 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0526 K08835 - - csv:101215648 886.715
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0526 Cco-Chr5:4222715 Cco11g1840 Cco-Chr11:31059705 4.90E-50 dispersed
Cco09g2111 Cco-Chr9:35503847 Cco05g0526 Cco-Chr5:4222715 3.50E-93 transposed
Cco10g0091 Cco-Chr10:843819 Cco05g0526 Cco-Chr5:4222715 3.10E-87 transposed
Cco10g1271 Cco-Chr10:25464009 Cco05g0526 Cco-Chr5:4222715 3.30E-86 transposed
Cco05g0526 Cco-Chr5:4222715 Cco06g0697 Cco-Chr6:7793893 7.30E-54 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g641 . . . . . . . . . . . Cma14g01789 . Car14g01610 . . Cpe03g01498 . . . . . . . Cla06g00643 Cam06g0688 Cec06g0690 Cco06g0697 Clacu06g0674 Cmu06g0665 Cre06g1433 . . . Cone4ag0304 Lsi05g01693 . Chy05g00345 Cme06g00521 . . . . . . . . . . Cmo14g01826 . . . Car17g00157 . . . . . . . . . Cla05g00470 Cam05g0511 Cec05g0525 Cco05g0526 Clacu05g0512 Cmu05g0488 Cre05g0552 Lsi09g01255 Csa03g01242 Chy06g00495 Cme05g00538
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco11g1840 . 85 756 MAP Kinase Kinase Kinase Kinase AT1G53165 61.1 6.9e-214 740.7
Cco07g0773 . 270 530 MAP Kinase Kinase Kinase Kinase AT1G53165 53.4 3.9e-68 256.5
Cco11g1192 . 254 514 MAP Kinase Kinase Kinase Kinase AT1G53165 53.1 3.3e-67 253.4
Cco11g1840 . 85 755 MAP Kinase Kinase Kinase Kinase AT3G15220 63.1 7.1e-219 757.3
Cco07g0773 . 270 530 MAP Kinase Kinase Kinase Kinase AT3G15220 51.9 1.8e-68 257.7
Cco11g1192 . 254 514 MAP Kinase Kinase Kinase Kinase AT3G15220 51.5 1.5e-67 254.6
Cco11g1192 . 4 826 MAP Kinase Kinase Kinase Kinase AT1G69220 58.7 5.4e-242 834.3
Cco07g0773 . 4 841 MAP Kinase Kinase Kinase Kinase AT1G69220 57.9 2.3e-240 828.9
Cco09g2111 . 1 668 MAP Kinase Kinase Kinase Kinase AT5G14720 66.2 7.4e-253 870.2
Cco05g0526 . 32 385 MAP Kinase Kinase Kinase Kinase AT5G14720 51.3 1.2e-96 351.3
Cco10g0091 . 7 721 MAP Kinase Kinase Kinase Kinase AT4G24100 64.9 1.0e-247 853.2
Cco10g0091 . 11 722 MAP Kinase Kinase Kinase Kinase AT4G10730 64.7 1.4e-246 849.4
Cco10g1271 . 4 478 MAP Kinase Kinase Kinase Kinase AT1G70430 52.1 1.2e-132 470.7
Cco10g0091 . 5 369 MAP Kinase Kinase Kinase Kinase AT1G70430 56.8 4.7e-118 422.2
Cco10g1271 . 1 676 MAP Kinase Kinase Kinase Kinase AT1G79640 59.7 5.4e-216 747.7
Cco09g2111 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 59.2 2.7e-103 372.9
Cco10g1271 . 8 324 MAP Kinase Kinase Kinase Kinase AT1G23700 53.1 2.0e-87 320.1
Cco10g0091 . 15 306 MAP Kinase Kinase Kinase Kinase AT1G23700 50.8 2.3e-75 280.0
Cco05g0526 . 32 488 MAP Kinase Kinase Kinase Kinase AT4G14480 59.4 7.7e-143 504.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013881 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86821 PF00069 Pkinase 1.10E-59 CL0016 Cco PK