Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0539 ATGAATGAGGACTATAAAAGCATTGAACCAGGGACGGATTTAGGACTTGGCTTGGGTTACACAGACCAATACATTCAGGGAAGATTGACCAACAAATCAGGTGTAGGTGCAAATGCAGGTTCAATGGTGGATGTGAAGTATGTTACCACCGACTCCCTGTCTGAACTAGTTTGGTCTCCACACAAAGGTTTGAGCCTTAGATGCGCTGATTCCAGCTTCAATAATAGAAAAACCTCGATCTTGTGGGATGCAGCGGCCAATGATGCAAGTTTTGCACTGCCACAAAGTGTAATAGCTGAGGAGTCTACTTCCAATAATTTACTTGATAATAGAACTATTATTTTGTCACAAGCAGAGAGTCATTTGAAGAATATATCTGAGGGTAAACAAACTTCAAATAGGACCAGTTCTGACGATGCTGCCTGCATGACAGGCGAAGTACAAATGACATTGGGGAAAGGGGTGGGAAACTTTGCAAATGAAACAGTTAGCAGGGCAGAAGTGTCTGTTGTATGTTTTAAACAGGAAGATCTACAAGCAACTGGAGGAGTAAATATAACTGATGCAGGAAACATTCTGGTGAACGAAGTATTGACAATGGGGAAAAATGACTGCTCATACATGCCAGTTTCCGTAAACAGAATCAATGAAGTATCAATGAATCAAGGTGAACCTGAGCTTGAAAAAGTGCATCATGAATTGTTAGATATGGATCCAATTGGTGGAGACATAAATGAAGATAAAAATATTACAGCTGGAAAGGTTGTTCTTCAACCCTTGAGTACATTTGAGCCTACTGTATCTCGTGTTACTTTTTTAGGGAAACTGGAATCATCTGCAGAAAATGACTTGCAAAATATATATGATAAAGATCCTGGGTGTGGGGGAAGTAAAATTATAGTGACAGTGACGGATTCTTCCCATGAAGTGAGAGGCAGTAACCAGCAAGAAGAAAAAGACAATTGCAAAGACAGGGCTGACTCAGCTTCTCCAAGTAGTTGTGGTATGCATTGGTTACAAAGGAAAGGCAAGGAAAAGGCTCTGTCTGATGGTGATGTTCATCGAAGAATGTTGAACGATGATGACAACAGCTACGGAAGTGTTGAAAGCTGTAACAGTGCTTTCCGTACAACGTCTAAGAGGCGATGGAGCTTTGAACAACACTTAATTGTTGGAAACAAAAGAGCCAAAAAGCAAGACGATAATGCTCCTGGTCTAGTATCAAACCTTGGTCAAGATAGCTCTTTCATGAACTGGATATCTAACATGATGAAAGGATTCTCAGAGTCGATACAAGATGAGGCACCTTCTCTTGACCTTACCCTTGCAAAATGTGATGTTGAACATGGGGGCCTGAATGAAGAACCGATAGAAAAGAAGATTAATGCTCCTGGGTTCAGTAGCGTCGGTTTCCAATCTATCTTCCGGTCCTTGTATAATCCACTAATGAGAGGTAGCGAAGGAGCACCAATTGCAACTTGTCAAGCCAAACAAGAAGCTAAGGAAATTGAAATGATCAAAAACAGTTGTGATCTTAATGCAACTCCAATATCCTGTTTTGGAGAGTCTGATCACTTCGGCAAACAACTACTGCTGAACAACGAGAATGAGGCAGAGCTTATATCTGGAAATAGACCAACCCTGCTTATGCAAGTGAAGAATTCACCTGAAATTTCTTGTGGCAGTCATCAAAGTCATAAAACCAGGTCTCAGGAGAACCAGAATTCATGCAAGCTTATAAGTGATGCTGGAACAGGTGAATCTATGCACTCTGCTTTTGGTAAGTGCAAGTCAAACAGTATAGAGAATGTTGACTGTGATCTACCGTGTGGAAAGATTAACCATACTACTGGTAATGCAAGTGATCCTCTCAAAAGCTTGTGGATTTCCCGTTTTGCTGCCAAAGCATCTGGGTTTATGGCAAACCCAGAAACTTGCAACCTAAATACCAAGGATGATTCCCAATGTTCCATGCACAGCCCTAGACATATTCCTTGCCCTCAAAATCACATTGATCATCATTCCATGGATGACTTAGATACTGCTGTTAGTAAGGAACAACACAATACAGCTAATACTGAGGTTTCTCCTGGTCATAAAGAATTCAAAAGCCATAATGAGCAGAAATCCATTAGTAAGTTCAAATCTGTTTTACGTTCTCCTCAAATAAGAAGTCCAGAGGCAATGGCTTCTGTCTTTGCTAGGAGATTAGGTGCATTCAAACACATCATACCGTCAGATTTGACCGTAAATGTGGGTCATGAAACTGTGACCTGTTTCTTTTGCGGCACAAGAGGTCATACTCTACATAATTGTTCTGAAATTACTGAAAGAGAAATTGAGGATCTTTCAAGAAACATCAGGTTCTGTAACGAGACAGTTGATCCCCCTTGTTCATGCATACGGTGCTTTCAGCTCAATCATTGGGCTATTGCATGCCCACTCGCTCCCTCAAGAGGTCAACAGCAATCTGAGTCCCATGCTTCTTTGGCTGATTGTTATGATTCTGGTGAGCTCCAACTTACTTCTAGGATCGGTTCAAGTGTAAAACCCCAACACCTTGAGGATAGAAAGGTGGATGGGGTTGCATCGATTGTAGATGATACTGGTGATCCCAATATTAAAACTGATCTTAGTCTTGATTTTAAAGTCACTGAACAAGTGAAGTCTGCAGCAATATCGATTCCAAAATGTGTTATTCCAAGATTTCCAGAGAAGAGTTCGAAAGGAAGTGAGATGGTACAAGTTGACAGCTTTGTTTACAAGCAGAATTCCGATATGCCACAAGTGGTCTTCAATGCAGTAAAAAAACTTCGACTGTCTCGAAGCAATATTCTCAAGTGTATGAATTCCCACGTGTCACTGTCACATCTTGATGGTTTTTTCTTGCGTATTCGGCTTGGGAAGTGGGAAGAAGGACTTGGGGGAACTGGGTACCATGTGGCTTGCATAAGGGGTGCACAACTCACGAAAAATTCTATTTCTGTTATAGTTCGAGGGGTTGAATGCCAAGTTCAGACCCAGTACATTTCCAACCATGATTTTCTCGAGGATGAGCTGAGGGCATGGTGGTGTACAGCCTCAAAAGATGGCAGCAGAGTTCTTCCTCTGGTAGCAGATTTAAGAGCCAAAGTGAAAAAGAAAAAGGAGTTGGGTTTCTAA 3162 41.37 MNEDYKSIEPGTDLGLGLGYTDQYIQGRLTNKSGVGANAGSMVDVKYVTTDSLSELVWSPHKGLSLRCADSSFNNRKTSILWDAAANDASFALPQSVIAEESTSNNLLDNRTIILSQAESHLKNISEGKQTSNRTSSDDAACMTGEVQMTLGKGVGNFANETVSRAEVSVVCFKQEDLQATGGVNITDAGNILVNEVLTMGKNDCSYMPVSVNRINEVSMNQGEPELEKVHHELLDMDPIGGDINEDKNITAGKVVLQPLSTFEPTVSRVTFLGKLESSAENDLQNIYDKDPGCGGSKIIVTVTDSSHEVRGSNQQEEKDNCKDRADSASPSSCGMHWLQRKGKEKALSDGDVHRRMLNDDDNSYGSVESCNSAFRTTSKRRWSFEQHLIVGNKRAKKQDDNAPGLVSNLGQDSSFMNWISNMMKGFSESIQDEAPSLDLTLAKCDVEHGGLNEEPIEKKINAPGFSSVGFQSIFRSLYNPLMRGSEGAPIATCQAKQEAKEIEMIKNSCDLNATPISCFGESDHFGKQLLLNNENEAELISGNRPTLLMQVKNSPEISCGSHQSHKTRSQENQNSCKLISDAGTGESMHSAFGKCKSNSIENVDCDLPCGKINHTTGNASDPLKSLWISRFAAKASGFMANPETCNLNTKDDSQCSMHSPRHIPCPQNHIDHHSMDDLDTAVSKEQHNTANTEVSPGHKEFKSHNEQKSISKFKSVLRSPQIRSPEAMASVFARRLGAFKHIIPSDLTVNVGHETVTCFFCGTRGHTLHNCSEITEREIEDLSRNIRFCNETVDPPCSCIRCFQLNHWAIACPLAPSRGQQQSESHASLADCYDSGELQLTSRIGSSVKPQHLEDRKVDGVASIVDDTGDPNIKTDLSLDFKVTEQVKSAAISIPKCVIPRFPEKSSKGSEMVQVDSFVYKQNSDMPQVVFNAVKKLRLSRSNILKCMNSHVSLSHLDGFFLRIRLGKWEEGLGGTGYHVACIRGAQLTKNSISVIVRGVECQVQTQYISNHDFLEDELRAWWCTASKDGSRVLPLVADLRAKVKKKKELGF 1053
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4299341 4304452 + CcPI632755_05g005390.1 Cco05g0539 178167

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0539 1053 ProSiteProfiles Zinc finger CCHC-type profile. 759 774 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cco05g0539 1053 Pfam Plus-3 domain 935 1025 IPR004343 GO:0003677(InterPro)
Cco05g0539 1053 MobiDBLite consensus disorder prediction 311 326 - -
Cco05g0539 1053 SMART rtf1 929 1029 IPR004343 GO:0003677(InterPro)
Cco05g0539 1053 SMART c2hcfinal6 799 815 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cco05g0539 1053 SMART c2hcfinal6 758 774 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cco05g0539 1053 MobiDBLite consensus disorder prediction 307 334 - -
Cco05g0539 1053 PANTHER PLUS3 DOMAIN-CONTAINING PROTEIN 1 1053 - -
Cco05g0539 1053 Coils Coil 773 793 - -
Cco05g0539 1053 SUPERFAMILY Plus3-like 931 1050 IPR036128 GO:0003677(InterPro)
Cco05g0539 1053 ProSiteProfiles Plus3 domain profile. 929 1053 IPR004343 GO:0003677(InterPro)
Cco05g0539 1053 Gene3D - 930 1050 IPR036128 GO:0003677(InterPro)
Cco05g0539 1053 Gene3D - 753 831 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0539 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g618 . . . . . Bpe14g01228 . . . . . Cma14g01781 . Car14g01602 . . Cpe03g01490 . . . . . . . . . . . . . . Cone14ag0137 Cone15ag0142 Cone7ag0299 Cone4ag0300 Lsi05g01674 . . Cme06g00540 . . Bda11g00614 Bda13g00089 . Bpe13g00571 Bma02g00807 . . . Cmo14g01817 . . . . . . . . . . . . . Cla05g00483 Cam05g0526 Cec05g0539 Cco05g0539 Clacu05g0525 Cmu05g0497 Cre05g0564 . Csa03g01258 Chy06g00513 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004918 3 0 0 1 2 1 1 1 1 1 1 1 2 1 0 1 1 2 1 1 1 1 1 1 1 1 1 5 5 1 40