Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0540 ATGAAGCACGAAGATGGCGGTTTCGGGAAAATCATTCCATCGTCCCACTATCTTAATCCCTCGTTCGTAGGAGGACGCCATTTCCGCCGGCCTTCCAAGGCTGTGATCAACAATCAGAAGTTGATTCCGCATCTACATAGGACGAAGTCCGGCCGTGTTGATTTCTTGGAGAGATTTTCGCATTATGTTGCGAGGCAATTGGGGATTTCAGATGTAGATGAGTGTCCTCAACTCTGCAAGTTAGCAAACAATTATTTGAGGAAGACAAAAGGGTGTGAGGAAGAAATTTATGCATATTTCGCTAGTGAAGCCGAGGGAGAATCTCTGTATGTGAAGTTAGTGAATGAGTTTGATCAATGCATCTTGAGTTATTTCGCCTTCCATTGGAGCCAAGCTTCGTTGATGATTAATCAGGTTTTGGGTGTTGACTCCGAGCACAAGAAGCTGAAAGACCTTGTGGTGGCAGCAACTAGGAAGCAAAGATTCGAAAGGGTGACCAAGGATTTGAAAGTGACTAGGGTGTTCTCTACTTTGGTGGAGGAGATGAAGAAGATTGGCTGTGCTTCTTCTAAGGGGGAGTCAAAATGCTCCCTTGTGTCACCGCGGTCGTGTCAAAGAGATAGGAGCCCTGTGCTTCTTCTTATGGGTGGTGGCATGGGTGCTGGGAAGAGTACTGTCCTCAAAGACATTCTGAAAGAGCCCTTCTGGTTGGAAGCAGAAACAAACACAGTGACAGTAGAGGCAGATGCCTTCAAAGAGACTGATGTTATCTACAAAGCCATCAGCTCGATGGGCTATCACGACGACATGCTCCAGACTGCCGAACTGGTACACCAGCCATCAACTGATGCTGCATCTTCGTTACTGGTCACAGCATTAAATGATGGACGGGATGTGATCTTGGACAGCACTCTGTCGTGGGAGCCATATGTCATGCAGACGATTGAAATGGCTCGAAACATTCACAAGCGTCAATATCGAATGGGAGTTGGGTACAAGGTAGAGAATGGCAATGTCACAGAGAATTACTGGGAGCCTGTGAGTGAAGAAGAGGAAGATGGGAAAATGCAAAATAGAAAGCCATATAGAATAGAGTTGGTTGGAGTTGTTTGTGATGCTCATCTAGCTGTTGTTAGAGGAATAAGGAGAGCTATAATGATGGGAAGGGCTGTGAGGGTGAATTCACAGTTGCAATCCCACAAGAGATTTGCTAATGCTTTTCCGAAATACTCCGAAGTTGTTGATAGTGTCAGGCTCTATTCTACCAATTCCATTGGCAACCCGCCTAAGTTGATCCATAGAAAAGATGGCAACGACCCGTTTCAGATGATTGACCCGGAAGCAAATGCATGTTTGACAACATTGAGCAATTTGAACCCCGATGCAGAATCCGTTTACGAGCTATACCCGAACCCGAGCCCATTTTCTGAACCTGAGGCCATTTGGAACGAAATTGCTTTGACTCCTTCGCGGTTACATTCTCAGAAAGAGCTAAGATCTGCTATTAAAAAGCTAGAAAGTTCAAAAACAATCTCAAATGAAATTATACAGTGA 1554 45.11 MKHEDGGFGKIIPSSHYLNPSFVGGRHFRRPSKAVINNQKLIPHLHRTKSGRVDFLERFSHYVARQLGISDVDECPQLCKLANNYLRKTKGCEEEIYAYFASEAEGESLYVKLVNEFDQCILSYFAFHWSQASLMINQVLGVDSEHKKLKDLVVAATRKQRFERVTKDLKVTRVFSTLVEEMKKIGCASSKGESKCSLVSPRSCQRDRSPVLLLMGGGMGAGKSTVLKDILKEPFWLEAETNTVTVEADAFKETDVIYKAISSMGYHDDMLQTAELVHQPSTDAASSLLVTALNDGRDVILDSTLSWEPYVMQTIEMARNIHKRQYRMGVGYKVENGNVTENYWEPVSEEEEDGKMQNRKPYRIELVGVVCDAHLAVVRGIRRAIMMGRAVRVNSQLQSHKRFANAFPKYSEVVDSVRLYSTNSIGNPPKLIHRKDGNDPFQMIDPEANACLTTLSNLNPDAESVYELYPNPSPFSEPEAIWNEIALTPSRLHSQKELRSAIKKLESSKTISNEIIQ 517
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4322380 4324815 + CcPI632755_05g005400.1 Cco05g0540 178168

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0540 517 Gene3D - 198 447 IPR027417 -
Cco05g0540 517 PANTHER UNCHARACTERIZED 33 509 IPR044802 -
Cco05g0540 517 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 206 322 IPR027417 -
Cco05g0540 517 Pfam Zeta toxin 204 329 IPR010488 GO:0005524(InterPro)|GO:0016301(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0540 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0540 Cco-Chr5:4322380 Cco11g0386 Cco-Chr11:3881493 6.20E-167 dispersed
Cco05g0540 Cco-Chr5:4322380 Cco06g0692 Cco-Chr6:7738747 7.30E-168 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g616 . . . . . . . . . . . Cma14g01779 Car06g01161 Car14g01601 . . Cpe03g01489 . . . . . . . . . . . . . . . . . Cone4ag0298 . Csa02g01087 Chy05g00349 Cme06g00541 . Blo07g00245 . . . Bpe13g00575 . . . . . . Cma17g00177 . Car17g00159 Cpe12g00153 . . . . . . . . Cla05g00484 Cam05g0527 Cec05g0540 Cco05g0540 Clacu05g0526 Cmu05g0498 Cre05g0565 . Csa03g01259 Chy06g00514 Cme05g00535
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000661 0 3 3 1 2 3 6 3 3 3 3 3 5 3 3 5 3 4 5 3 3 3 3 3 3 3 3 7 5 3 100