Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0542 ATGGCTTTATTACACAGTCGTTTATGCCATGCCACGAACTTCTTCGACACATTTCAAACCTCCTTCTCTGAATTCCATGGCTCTCAAGTTTTACTGAAGTACGGTTCGTCGATTGTCTTCAGAAACCGCTCTTTCTGCTCTCCGTTTTATGCTTTCACCACCGATACATTTTCCAATCGAATTTCGTATGGGAGTTTAAGTTCACGAAAACCCATTTCCCGATATAGTTTTGGGAGAAATGTATGTCGTGCTAGTTGGATAGATAGGTGGAACGAAACCGCGAAACAAAATCGCCCGAAACCACCTCGGGCTGTGTTGGATTATCCCAGTAGCGATGACAACGAAGTTTCAATTTCAAGTTCATCGAGGAGTTATAGAGATGGTAATCGGATTGATGATGATGGAAGAGAGGGAAGTACAATGGAGAAGATTGTGAGGAAATTGAAGAAATTTGGGTACATGGACGATGAGAATAAAGAGAAGGGACAAGAGAGAGCCATCGAAAAAGGGTCTGTGGAGGACATATTTTATGTTGAGGAAGGAATGTTGCCTAATACTCGAGGTGGGTTTTCTGAGGAATCGCCTCTGGGAGATGAGAACATGTTTGGAAGTAATGGGGAAGTTAGGTTTCCATGGGAGAAGCCAAAGGAAAAGGAAGACGGAGATGGGGATTCAACTAGGAGAAGGGGCAGGACATCTTTGGCAGAATTGACCCTTCCCGAGCCAGAATTGAGAAGGCTGAGGAACTTGACTTTCCAGAAAAAGCACAAGATGAAGATAGGCGGTGGAGGAGTGACTCAGGCTGTTGTGGATGTCATTCATGAAAAATGGAAATCTTCAGAAATTGTGAGGCTTAAAATTGAAGGTCCTCCTGCACTTAACATGAAAAGGATGCACGAGATATTGGAGAGAAAAACTGGTGGACTGGTTATCTGGAGGTCGGGAACTTCATTGTCTCTATATAGAGGTGTAAGCTATGAGCTTCCTGAAGCACCACAATTTAACAAACGGATTTACAAGAGAAATATGATCACTACTTTGTCTGGAACTGGTGGCAGTGCTATAGTTCCTTCTGAATATTCTTCTCACGGTCATGTATATGAGTCGCAACGAAAAAGAGCAGAAACTTCAGATGGTGAACAGTGCAGCGAACAATTGACAGAAGTGCAAGTGAATTATGAGGATGAAGTAGATAAGTTACTGGATAGTTTGGGTCCAAGATACACAGACTGGCCAGGATTGGATCCTTTACCCGTTGATGCAGATTTCCTCCCAGGAGTAGTTCCTGATTATGAACCTCCATTTAGAATACTTCCCTATGGAGTGAGATCTTCTCTTGGAGTTAAGGAGGCTACAGCCTTAAGACGACTTGCCAGAAGACTTCCTCCTCATTTTGCCCTAGGCAGAAACAGGCAGCTGCAAGGTTTAGCCATTGCAATGGCCAAATTGTGGGAACGAAGTTCAATTGCAAAAATCGCCTTGAAACGAGGTGTGCAGCTGACTACTAGCGAGAGAATGGCTGAAGAGATCAAGAAATTGACAGGAGGCATTCTTCTGTCAAGAAACAAAGACTTTCTGGTATTCTATAGAGGAAAGAGTTTCTTGTCGCCTGAAGTCACTGAAGCTTTGCTAGAAAGGGAGAGGCTGGCAAAGTCTCTACAAGATGAAGAAGAACAGGCTAGGTTGAAAGCGTCAGCCTTGGTGGTACCTGGCATTGAGAAAACAGAGCAATCTGGAACCGCAGGTTCTCTAGAGGAAACACTAGATGCCGATGCTAAATGGGGAAAGCCTCTAGATGATGAGCACAAGGAAAAAGTAATGCAGGAAGCTGAACGATTGAGGCACACTGACCTTGTCAGGAAGTTGGAACGGAAGCTTGCTTTCGCTGAAAGAAAATTAGTGAAAGCTGAACAAGCATTATCTAAGGTAGAAGCATTTATGACACCGGCAAAGCCGGCTGCACCTGATAGCATAACTGAGGAGGAAAGATTTATGTTTCGTAAGCTTGGTCTACGAATGAAAGCTTTCTTGCTTCTAGGTAGGCGTGAAGTTTTTGATGGCACAGTGGAGAACATGCACTTGCATTGGAAGTATCGTGAATTGGTGAAGATCATGATAAAAGCTAATTCCTTTGATCATGTCAAAAAAATTGCTTTGCAACTCGAAGCTGAGAGTGGAGGTGTCCTAGTTTCTATTGACAAAGTCTCCAAAGCATATGCTATAATCGTTTATCGAGGAAAGGATTATCAACGGCCATCTTTGCTGAGACCCAAGAATCTTTTGACAAAGAGGAAGGCTCTAGCACGCTCGATCGAGCTTCAAAGGCATGAGGCTTTGCTGAAACATATATCAGCAATGCAGAGTAGAGTGGACAAACTAAAATCCGAAATCGAACAAATGGAGAAAGTGAAAGACCAAGGAGATGAAGTATTATACAATACACTGGATTCTGCTTATCCTACCGACAACGATTCAGAGGAAGAAGATTACGGTACATATACTGAGGCATATGGTCAGAGTAGTGAAGTTGAAGATGAAGATAATATCATGGCTAGCGACGAGTACCTGGAAGGGGATTTTCCACATGGAATCCAAGTACAAGAATCTGAGGTCGAATATGAGACATCTGAATCACGTCACATATAG 2646 43.16 MALLHSRLCHATNFFDTFQTSFSEFHGSQVLLKYGSSIVFRNRSFCSPFYAFTTDTFSNRISYGSLSSRKPISRYSFGRNVCRASWIDRWNETAKQNRPKPPRAVLDYPSSDDNEVSISSSSRSYRDGNRIDDDGREGSTMEKIVRKLKKFGYMDDENKEKGQERAIEKGSVEDIFYVEEGMLPNTRGGFSEESPLGDENMFGSNGEVRFPWEKPKEKEDGDGDSTRRRGRTSLAELTLPEPELRRLRNLTFQKKHKMKIGGGGVTQAVVDVIHEKWKSSEIVRLKIEGPPALNMKRMHEILERKTGGLVIWRSGTSLSLYRGVSYELPEAPQFNKRIYKRNMITTLSGTGGSAIVPSEYSSHGHVYESQRKRAETSDGEQCSEQLTEVQVNYEDEVDKLLDSLGPRYTDWPGLDPLPVDADFLPGVVPDYEPPFRILPYGVRSSLGVKEATALRRLARRLPPHFALGRNRQLQGLAIAMAKLWERSSIAKIALKRGVQLTTSERMAEEIKKLTGGILLSRNKDFLVFYRGKSFLSPEVTEALLERERLAKSLQDEEEQARLKASALVVPGIEKTEQSGTAGSLEETLDADAKWGKPLDDEHKEKVMQEAERLRHTDLVRKLERKLAFAERKLVKAEQALSKVEAFMTPAKPAAPDSITEEERFMFRKLGLRMKAFLLLGRREVFDGTVENMHLHWKYRELVKIMIKANSFDHVKKIALQLEAESGGVLVSIDKVSKAYAIIVYRGKDYQRPSLLRPKNLLTKRKALARSIELQRHEALLKHISAMQSRVDKLKSEIEQMEKVKDQGDEVLYNTLDSAYPTDNDSEEEDYGTYTEAYGQSSEVEDEDNIMASDEYLEGDFPHGIQVQESEVEYETSESRHI 881
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4329885 4333977 - CcPI632755_05g005420.1 Cco05g0542 178170

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0542 881 MobiDBLite consensus disorder prediction 204 235 - -
Cco05g0542 881 ProSiteProfiles CRM domain profile. 656 756 IPR001890 GO:0003723(InterPro)
Cco05g0542 881 SUPERFAMILY YhbY-like 446 537 IPR035920 -
Cco05g0542 881 Coils Coil 776 810 - -
Cco05g0542 881 PANTHER CRS1 / YHBY (CRM) DOMAIN-CONTAINING PROTEIN 73 839 IPR045278 GO:0000375(InterPro)|GO:0003729(InterPro)
Cco05g0542 881 SUPERFAMILY YhbY-like 238 327 IPR035920 -
Cco05g0542 881 MobiDBLite consensus disorder prediction 95 139 - -
Cco05g0542 881 FunFam CRS2-associated factor 1, chloroplastic 445 541 - -
Cco05g0542 881 FunFam CRS2-associated factor 1, chloroplastic 238 333 - -
Cco05g0542 881 SMART CRS1_YhbY_2 446 530 IPR001890 GO:0003723(InterPro)
Cco05g0542 881 SMART CRS1_YhbY_2 239 322 IPR001890 GO:0003723(InterPro)
Cco05g0542 881 SMART CRS1_YhbY_2 658 745 IPR001890 GO:0003723(InterPro)
Cco05g0542 881 SUPERFAMILY YhbY-like 658 755 IPR035920 -
Cco05g0542 881 Pfam CRS1 / YhbY (CRM) domain 658 745 IPR001890 GO:0003723(InterPro)
Cco05g0542 881 Pfam CRS1 / YhbY (CRM) domain 241 322 IPR001890 GO:0003723(InterPro)
Cco05g0542 881 Pfam CRS1 / YhbY (CRM) domain 449 530 IPR001890 GO:0003723(InterPro)
Cco05g0542 881 ProSiteProfiles CRM domain profile. 444 541 IPR001890 GO:0003723(InterPro)
Cco05g0542 881 MobiDBLite consensus disorder prediction 210 231 - -
Cco05g0542 881 FunFam CRM-domain containing factor CFM3B, chloroplastic 657 759 - -
Cco05g0542 881 Coils Coil 539 559 - -
Cco05g0542 881 ProSiteProfiles CRM domain profile. 237 333 IPR001890 GO:0003723(InterPro)
Cco05g0542 881 Gene3D - 445 541 IPR035920 -
Cco05g0542 881 Gene3D - 657 759 IPR035920 -
Cco05g0542 881 Gene3D - 237 337 IPR035920 -
Cco05g0542 881 Coils Coil 612 646 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0542 K27708 - - csv:101216848 1481.46
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1603 Cco-Chr3:30654451 Cco05g0542 Cco-Chr5:4329885 1.40E-150 dispersed
Cco05g0542 Cco-Chr5:4329885 Cco10g1446 Cco-Chr10:27570929 2.00E-120 dispersed
Cco05g0542 Cco-Chr5:4329885 Cco06g1674 Cco-Chr6:27321915 7.60E-133 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g611 . . . . . . . . . . . Cma14g01778 . Car14g01599 . . Cpe03g01487 . . . . . . . . . . . . . . . . . Cone4ag0294 Lsi05g01670 . . Cme06g00543 . . . . . . . . . . Cmo14g01815 . . . . . . . . . . . . . Cla05g00486 Cam05g0529 Cec05g0542 Cco05g0542 Clacu05g0528 Cmu05g0500 Cre05g0567 . Csa03g01261 Chy06g00516 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011586 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 30