Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0545 ATGGCCACCGTGAAATTACCCACTGACAAGCTCATGGTTTGTTTGACTTGCCCTCTTTGCAATAACTTGTTCACTCATGCTACCACCATATCTGAATGCCTCCACACGTTTTGCAGGGTTTGTATCTATGAGAAGATAACTGAGGAGGAATTAGAGGGTTGTCCTGTCTGTAACACAAATTTAGGGGGTGTTCCTTTGGAGAAACTCAGGGCAGACCACACAATGGATGATTTGAGGGAGAAGATATTCCCTTGTAAAGGGAGGAAGGAGAAGGAACCTGAAACAACACACTCAGCCTCAGTTTCATCGCCTACAAAACGAAAAGAGAGATCACTCTCTTCTTTAGAGATAGATAATACATATACAACTTCTGACTCTGCAACAACGAAAATGCTGTCGAAATCTACAGCACAAGAGAACCTCGCTGAGCAACAATGTGTTTCCACCACGATTGTGCACAGTAAACCCATCTTTGATCAAAATAAGCAGAACAATACCCAAGTAATGGAAAGGAAAACTGTTGACTTGAATAAAAAAGAAGAAGCAACTGTAACGTCTTCAAATGATTGTAATATACAAGATAATACTATTGCCAAGGCAGAGACAATTCAGATTGATGATAACTATTGTAATGTTCAAGAACATGGTCACAAGCCAATAATGGAAAGAGTTGAAAGTGGATCTTATGGAACTTCACCTTCTATTGAACGTGGAAAATTGCAGGATGTTTCAAGGGAAAGAAGATTAGCTAGCAGCAATGGATCTTCTGGTAAATTGCAGGATCCTATAGGTGATATTGATGCAGATGGACGATGCAATATGTTATCAAATCCTATATGGTTTGCACTAGTTGCTTCCAATCACCAGGAAGGAAATGAGCCTTTGCCTCAGATGTCCTCAAACTACTTCAGGGTCAGCGATGGCAGTATACCTGTGTTATTTATCCAGAAATATCTTGCGAAGAAACTGGGCCTTGCTAGTGAGATTGAGGTGGAAATCTCATTCAAGGGTCAGCCAGTGAGCTCCACATTGCATCTACATGATATCGTAGAACTGTGGCGACAGACAACCACCAAAGTAGAACTAATACAGATATCTGTGGGCAGCTCAGCCAAGGATTTTGTGATGGTTCTATCTTATGGTCGGAAGTGTTGTCACCCTGGAAAATTCCGGATATTTGTCCCAACTTAA 1191 41.14 MATVKLPTDKLMVCLTCPLCNNLFTHATTISECLHTFCRVCIYEKITEEELEGCPVCNTNLGGVPLEKLRADHTMDDLREKIFPCKGRKEKEPETTHSASVSSPTKRKERSLSSLEIDNTYTTSDSATTKMLSKSTAQENLAEQQCVSTTIVHSKPIFDQNKQNNTQVMERKTVDLNKKEEATVTSSNDCNIQDNTIAKAETIQIDDNYCNVQEHGHKPIMERVESGSYGTSPSIERGKLQDVSRERRLASSNGSSGKLQDPIGDIDADGRCNMLSNPIWFALVASNHQEGNEPLPQMSSNYFRVSDGSIPVLFIQKYLAKKLGLASEIEVEISFKGQPVSSTLHLHDIVELWRQTTTKVELIQISVGSSAKDFVMVLSYGRKCCHPGKFRIFVPT 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4348285 4350136 - CcPI632755_05g005450.1 Cco05g0545 178173

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0545 396 SMART ring_2 17 57 IPR001841 -
Cco05g0545 396 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 1 162 IPR044807 GO:0004842(InterPro)
Cco05g0545 396 SUPERFAMILY RING/U-box 14 81 - -
Cco05g0545 396 ProSitePatterns Zinc finger RING-type signature. 33 42 IPR017907 -
Cco05g0545 396 MobiDBLite consensus disorder prediction 85 120 - -
Cco05g0545 396 MobiDBLite consensus disorder prediction 224 263 - -
Cco05g0545 396 Pfam Zinc finger, C3HC4 type (RING finger) 17 57 - -
Cco05g0545 396 ProSiteProfiles Zinc finger RING-type profile. 17 58 IPR001841 -
Cco05g0545 396 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 112 IPR013083 -
Cco05g0545 396 Gene3D - 266 364 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0545 K16277 - - csv:101216620 587.415
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1796 Cco-Chr2:30805351 Cco05g0545 Cco-Chr5:4348285 7.00E-66 wgd
Cco05g0545 Cco-Chr5:4348285 Cco07g0065 Cco-Chr7:631333 2.70E-61 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g608 . . . . . . . . . . . Cma14g01775 . Car14g01597 . . Cpe03g01486 . . . . . . . . . . . . . . . . . . Lsi05g01665 . . Cme06g00546 . . . . . . . . . . Cmo14g01812 . . . . . . . . . . . . . Cla05g00488 Cam05g0533 Cec05g0545 Cco05g0545 Clacu05g0531 Cmu05g0503 Cre05g0571 . Csa03g01264 Chy06g00518 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014069 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 23