Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0546 ATGGTCAACATGCTGGAAACTGATCTTTGTCTCGGCCTCCCCGGCGGTGGCGGAGAGCCGGAAACTCCCAAAGCTAATGGGAAAAGAGGGTTCTCTGAAACCGTTGATCTGAAACTCAATATCCAATCTAAGCCTGGAGTTACCGTCGATCTCACTCCACAGAATAATAATACTTCAACTGATGAGGAGAATCTCATAACCTCCAAAGATCCTGCAAAGCCACCTGCCAAGGCACAAGTTGTGGGATGGCCACCGGTGCGATCTTACCGGAAGAATGCGATGTCTCAAAAGAGCACTGACGCCGGAGAAAAAGGTGGAAGCGGCGGTGGCGGTTCGGGTATGTTTGTCAAAGTCTGTATGGATGGCGCACCTTATCTGCGAAAGGTGGACCTAAAGATGTACAAAAGCTACCAAGAGCTGTCGAATGCCTTGGCCAAGATGTTCAGCTCCTTTACTATGGCGGGTGACTATGGGGCCCAAGGAATGATAGACTTCATGAATGAGAGCAAGTTGATGGATCTTCTGAACAGCTCTGAGTATGTGCCAACCTATGAAGATAAGGATGGTGATTGGATGCTGGTGGGAGATGTACCTTGGGAGATGTTTGTTGATTCATGCAAGCGCTTAAGGATAATGAAGGGATCAGAAGCTATTGGACTCGCCCCAAGAGCAATGGAAAAATGCAAAAGCAGAAGCTGA 699 48.35 MVNMLETDLCLGLPGGGGEPETPKANGKRGFSETVDLKLNIQSKPGVTVDLTPQNNNTSTDEENLITSKDPAKPPAKAQVVGWPPVRSYRKNAMSQKSTDAGEKGGSGGGGSGMFVKVCMDGAPYLRKVDLKMYKSYQELSNALAKMFSSFTMAGDYGAQGMIDFMNESKLMDLLNSSEYVPTYEDKDGDWMLVGDVPWEMFVDSCKRLRIMKGSEAIGLAPRAMEKCKSRS 232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4357147 4358991 - CcPI632755_05g005460.1 Cco05g0546 178174

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0546 232 Gene3D - 110 226 - -
Cco05g0546 232 SUPERFAMILY CAD & PB1 domains 111 213 - -
Cco05g0546 232 FunFam Auxin-responsive protein 109 224 - -
Cco05g0546 232 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 6 218 IPR003311 GO:0005634(InterPro)|GO:0006355(InterPro)
Cco05g0546 232 MobiDBLite consensus disorder prediction 1 29 - -
Cco05g0546 232 ProSiteProfiles PB1 domain profile. 113 214 IPR053793 -
Cco05g0546 232 Pfam AUX/IAA family 6 223 IPR033389 -
Cco05g0546 232 MobiDBLite consensus disorder prediction 44 65 - -
Cco05g0546 232 MobiDBLite consensus disorder prediction 44 80 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0546 K14484 - - csv:101217325 426.017
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0546 Cco-Chr5:4357147 Cco06g0674 Cco-Chr6:7500164 1.80E-97 dispersed
Cco05g0546 Cco-Chr5:4357147 Cco05g0548 Cco-Chr5:4375194 1.10E-38 proximal
Cco06g1078 Cco-Chr6:15977308 Cco05g0546 Cco-Chr5:4357147 1.60E-69 transposed
Cco02g1787 Cco-Chr2:30721262 Cco05g0546 Cco-Chr5:4357147 5.50E-39 wgd
Cco05g0546 Cco-Chr5:4357147 Cco06g0673 Cco-Chr6:7461515 1.80E-41 wgd
Cco05g0546 Cco-Chr5:4357147 Cco07g0064 Cco-Chr7:611745 2.80E-50 wgd
Cco05g0546 Cco-Chr5:4357147 Cco09g0723 Cco-Chr9:6561225 1.70E-44 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g604 . Blo12g00354 . . Bpe04g00805 Bpe14g01226 . . Cmo08g01088 Cmo17g00186 Cma06g01344 Cma14g01774 Car06g01165 Car14g01596 . Cpe08g00306 . . . . . . . . Cla06g00625 Cam06g0664 Cec06g0668 Cco06g0674 Clacu06g0652 Cmu06g0645 Cre06g1413 . Cone3ag0696 . . Lsi05g01663 Csa02g01105 Chy05g00364 Cme06g00548 Blo02g00605 Blo07g00243 Bda11g00610 Bda13g00091 . Bpe13g00577 . . Sed02g1370 Cmo06g01355 Cmo14g01811 Cma08g01113 Cma17g00190 Car08g00996 Car17g00168 . . Bhi12g02259 Tan06g2466 Cmetu06g0764 . . . Lcy13g0327 Cla05g00490 Cam05g0534 Cec05g0546 Cco05g0546 Clacu05g0532 Cmu05g0504 Cre05g0572 Lsi09g01278 Csa03g01265 Chy06g00519 Cme05g00516
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000184 9 5 7 6 9 5 10 5 6 6 4 5 11 6 6 10 5 9 3 5 6 6 6 6 6 6 6 7 6 3 190
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59228 PF02309 AUX_IAA 3.10E-81 CL0072 Cco TR