Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0552 ATGCATCCATTGGGAACACATTATAAAAACCTAATTTTCCAATGCCTCCATTGCAACTATAGTACGCTTCACTTCCAAGGCACTTTCAGCGCCGCCACCGCCGCCGCTATGGAGACGGGGCTCCGGCCAACGCTCGCCGCAGCTCCACCTTCCACCGGCGCCACCCTTCTCGGGAAGTACCAATTAGGCCGCCTTCTCGGTCGCGGAAGCTTCGCCAAAGTCTACCAAGCAGTTTCCTTAGCCGATAACTCCACCGTTGCCATCAAAATCATCGACAAATCCAAAACGGTCGGCGCCGCTCTTGAACATTGCATAGTCCGAGAGGTCGCCGCCATGCGCCGCCTCGATCACCACCCAAACATCCTCAAAATCCACGAAGTCATGGCGACCAAGTCCAAAATCTACCTGGTGGTCGAATTCGCCGCCGGCGGCGAACTCTTCTCCAAAATCTCCCGCCGCGGGCGATTCACTGAACCCGTCGCCCGCCCGTACTTCCAACAACTCGTCTCAGCCCTCAAGTTCTGCCACGAAAACGGCGTCGTTCACCGCGATGTGAAGCCACAGAATCTTTTGCTGGACGAACAGGGCAATCTGAAAATCTCCGATTTCGGCCTCTCTGCTTTACCCGAACAGCTCAGAGACGGGTTGCTCCACACGGCTTGTGGAACTCCAGCGTACTCAGCGCCGGAGGTCATGATCCGGCGCGGTGGCGGCGGATACGACGGTGGAAAGGCCGACGCCTGGTCTTGTGGAGTGATTTTATTCGTATTGCTCTGTGGGTTTCTCCCTTTCGACGACAGTAACCTAGCGGGGATGTACAAGAAAATCCACCGGCGAGAATTTCAAATCCCTAATTGGATATCGAAACCGGTCCGATTCCTAATATATCATCTCCTCGATCCGAATCCCAAAACGAGAATGAGCATTGAGACGTTAATGCAAAACCCCTGGTTCAAGAAATCGCTGCAATTGAAACAGAGTAATGAAAGTTTATTGCAACCGATGAGGGATTATCGATTGGGGACAGAGAGGGGAATTAGGGAAATGAATGCGTTCGATATAATTTCGATGTCGTCGGGGTTGGATTTATCGGGGCTGTTTGAAACGGCGGAGAAAAGGGCGGAGAGGAGGTTTACGTCGAGGGCGACGGTGATGGAGGTGGAGGAGAGGGTGAAGGAGATGGGCGGAGAGTTGGGGTACAAGGTGGAGGCGGGGGCGAAGGGAGGGGCGATCGGAATGGGGAAGGGGAGGGTGGTGGTGGTGGTGGAAGTGGTGAAGGTGGCGGTGGCTCCGGTGACATTGACGATGGTGGAGGTGAGGGTGGTGAAAGGAGGGGAGGAGTTTGAAGAACTCCATTGGAGGTGTTTTGAAGGTAAACTTGAAGGATTTGCAGTTCCATGGCAGAGGAAATGTAATATGTGA 1422 53.87 MHPLGTHYKNLIFQCLHCNYSTLHFQGTFSAATAAAMETGLRPTLAAAPPSTGATLLGKYQLGRLLGRGSFAKVYQAVSLADNSTVAIKIIDKSKTVGAALEHCIVREVAAMRRLDHHPNILKIHEVMATKSKIYLVVEFAAGGELFSKISRRGRFTEPVARPYFQQLVSALKFCHENGVVHRDVKPQNLLLDEQGNLKISDFGLSALPEQLRDGLLHTACGTPAYSAPEVMIRRGGGGYDGGKADAWSCGVILFVLLCGFLPFDDSNLAGMYKKIHRREFQIPNWISKPVRFLIYHLLDPNPKTRMSIETLMQNPWFKKSLQLKQSNESLLQPMRDYRLGTERGIREMNAFDIISMSSGLDLSGLFETAEKRAERRFTSRATVMEVEERVKEMGGELGYKVEAGAKGGAIGMGKGRVVVVVEVVKVAVAPVTLTMVEVRVVKGGEEFEELHWRCFEGKLEGFAVPWQRKCNM 473
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4434251 4435672 - CcPI632755_05g005520.1 Cco05g0552 178180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0552 473 CDD CIPK_C 350 454 - -
Cco05g0552 473 Gene3D Phosphorylase Kinase; domain 1 62 145 - -
Cco05g0552 473 Gene3D Transferase(Phosphotransferase) domain 1 146 338 - -
Cco05g0552 473 ProSiteProfiles Protein kinase domain profile. 60 318 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco05g0552 473 Pfam NAF domain 348 403 IPR004041 GO:0007165(InterPro)
Cco05g0552 473 SUPERFAMILY Protein kinase-like (PK-like) 57 339 IPR011009 -
Cco05g0552 473 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 55 402 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Cco05g0552 473 Pfam Protein kinase domain 60 318 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco05g0552 473 FunFam Non-specific serine/threonine protein kinase 53 145 - -
Cco05g0552 473 FunFam Non-specific serine/threonine protein kinase 51 340 - -
Cco05g0552 473 ProSiteProfiles NAF domain profile. 344 368 IPR018451 GO:0007165(InterPro)
Cco05g0552 473 ProSitePatterns Protein kinases ATP-binding region signature. 66 89 IPR017441 GO:0005524(InterPro)
Cco05g0552 473 ProSitePatterns Serine/Threonine protein kinases active-site signature. 180 192 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco05g0552 473 Gene3D Kinase associated domain 1, KA1 344 464 - -
Cco05g0552 473 SMART serkin_6 60 318 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0552 Cco-Chr5:4434251 Cco06g1418 Cco-Chr6:24685348 8.40E-94 dispersed
Cco09g1135 Cco-Chr9:10890107 Cco05g0552 Cco-Chr5:4434251 1.20E-14 dispersed
Cco03g1003 Cco-Chr3:15401361 Cco05g0552 Cco-Chr5:4434251 9.50E-07 transposed
Cco05g0552 Cco-Chr5:4434251 Cco06g0671 Cco-Chr6:7434095 2.90E-155 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86823 PF00069 Pkinase 1.20E-68 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0552 K12761 - csv:101217555 726.472