Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0565 ATGCTCGCAACACTCAAAGCGGAAGAACAAAGCCAACAGCTACAGCTTGTAGAGCGCGAAGATATTGAGGGTGAAGACGACTTGTTCGAAGCGATTGATAAACTGACTTCTCATGGAATTAATGCTGGAGACGTGAAGAAGCTTCAGGATGCAGGGATATACACCTGCAACGGTTTGATGATGCACACGAAGAAGCACTTGACCGGGATAAAAGGCTTATCCGAGGCGAAGGTTGATAAGATCTGCGAAGCTGCCGAAAAGCTAGTGAATTTTGGTTATATCACTGGAAGCGATGCTCTGCTTAGGAGAAAGTCTGTGGTTCGCATTACGACTGGAAGCCAGGCTCTCGATGAACTCTTAGGAGGTGGAATTGAAACTCTAGCAATCACGGAAGCTTTTGGAGAATTCAGATCCGGGAAAACACAACTCGCACATACTCTATGCGTCTCTACGCAGCTTCCGACCAGCATGCGGGGAGGGAATGGAAAGGTTGCATACATTGACACTGAAGGCACTTTTCGACCTGATCGAATTGTGCCTATAGCTGAAAGATTTGGCATGGACCCGGGAGCTGTCCTTGACAATATCATATATGCTCGTGCCTACACATACGAACACCAGCATAACCTTTTGCTCGGTCTGGCTGCAAAAATGTCTGAAGAACCATTTAAACTTCTGATTGTCGACTCTATCATCGCACTTTTTCGAGTGGATTTCACTGGAAGAGGAGAACTCGCAGAGCGCCAGCAAAAACTGGCGCAGATGTTGTCCCGATTAACTAAAATTGCAGAAGAGTTTAATGTAGCAGTTTACATGACCAACCAAGTCGTTGCAGACCCAGGTGGAGGAGTTTTTGTATCAGATCCCAAAAAACCAGCAGGAGGCCACGTTCTTGCCCATGCTGCTACAGTCAGATTGATGTTCAGAAAAGGCAAAGGTGAACAACGGATCTGCAAGGTGTTCGATGCCCCTAATTTGCCAGAGTCTGAAGCTATATCCTTAACTCACATCACACCTCACACTTGA 1026 46.49 MLATLKAEEQSQQLQLVEREDIEGEDDLFEAIDKLTSHGINAGDVKKLQDAGIYTCNGLMMHTKKHLTGIKGLSEAKVDKICEAAEKLVNFGYITGSDALLRRKSVVRITTGSQALDELLGGGIETLAITEAFGEFRSGKTQLAHTLCVSTQLPTSMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQHNLLLGLAAKMSEEPFKLLIVDSIIALFRVDFTGRGELAERQQKLAQMLSRLTKIAEEFNVAVYMTNQVVADPGGGVFVSDPKKPAGGHVLAHAATVRLMFRKGKGEQRICKVFDAPNLPESEAISLTHITPHT 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4592121 4595112 + CcPI632755_05g005650.1 Cco05g0565 178193

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0565 341 Pfam Rad51 102 332 IPR013632 -
Cco05g0565 341 CDD DMC1 109 332 - -
Cco05g0565 341 PANTHER RECA/RAD51/RADA DNA STRAND-PAIRING FAMILY MEMBER 12 331 - GO:0000150(PANTHER)|GO:0000730(PANTHER)|GO:0000794(PANTHER)|GO:0003690(PANTHER)|GO:0003697(PANTHER)|GO:0006312(PANTHER)|GO:0007131(PANTHER)|GO:0008094(PANTHER)|GO:0042148(PANTHER)|GO:0070192(PANTHER)
Cco05g0565 341 FunFam Meiotic recombination protein DMC1 91 340 - -
Cco05g0565 341 SMART AAA_5 126 312 IPR003593 GO:0016887(InterPro)
Cco05g0565 341 PIRSF Rad51 17 337 IPR016467 -
Cco05g0565 341 SUPERFAMILY Rad51 N-terminal domain-like 25 91 IPR010995 GO:0000166(InterPro)
Cco05g0565 341 Gene3D - 29 94 - -
Cco05g0565 341 NCBIfam meiotic recombinase Dmc1 32 332 IPR011940 GO:0000150(InterPro)|GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0007131(InterPro)
Cco05g0565 341 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 108 331 IPR027417 -
Cco05g0565 341 ProSiteProfiles RecA family profile 2. 282 331 IPR020587 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006259(InterPro)|GO:0008094(InterPro)
Cco05g0565 341 FunFam Meiotic recombination protein DMC1 homolog 12 90 - -
Cco05g0565 341 ProSiteProfiles RecA family profile 1. 105 276 IPR020588 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)|GO:0140664(InterPro)
Cco05g0565 341 Gene3D - 95 339 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0565 K10872 - - csv:101221817 648.662
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1528 Cco-Chr3:29899206 Cco05g0565 Cco-Chr5:4592121 1.20E-86 dispersed
Cco05g0565 Cco-Chr5:4592121 Cco11g1256 Cco-Chr11:24882557 5.60E-15 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g564 . . . . . Bpe14g01213 . . . . Cma06g01366 Cma14g01751 Car06g01181 . Sed12g0976 Cpe08g00289 Cpe03g01470 Bhi01g00755 Tan10g0784 Cmetu06g1587 . Hepe05g1591 . . . . . . . . . . . . Cone4ag0274 Lsi05g01643 . . Cme06g00570 . Blo07g00234 Bda11g00600 . . . Bma02g00822 Bma06g01573 . Cmo06g01378 Cmo14g01788 . . . . . . . . . . . . . Cla05g00504 Cam05g0555 Cec05g0567 Cco05g0565 Clacu05g0551 Cmu05g0523 Cre05g0592 . Csa03g01286 Chy06g00540 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010242 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32