Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0571 ATGCAATTCAATTTCTACGAGCAACCGGACTCGCCGCTAAATTGGACCAACATCGGAGCCTCTGCCATGTCACTGGCGACCCTTGGAAGCCGAAGGTTGCAGTTGACGATGGCTGTTCCCGACAAGGATCCAAGAGAGGAAGTGATTCAGGCATGGTATATGGATGATAGCGATGAAGACCAGAGGCTTCCTCATCACCTTGAACCGAAGCAATATTTGTCCCTCCAACAACTTGACGAACTTGGAGTTCTGAGCTGGAGACTAGATGCAGACATTTATGAAACAGATGAGGAATTGAAGAAGATACGTCGTGATCGTAATTACTCCTACATGGACTTCTGTGAGGTCTGTCCAGAAAAGCTTCCTAACTATGAAGAGAAGATTAAAAGCTTTTACGAGGAACACCTTCACACTGATGAGGAGATCCGTTATTGTGTGGCTGGGAGTGGTTATTTTGATGTTAGAGATCTGAATGACAAATGGATTCGTATTTGGGTAAAGAAGGGAGCAATGATTGTCTTGCCTGCTGGAATTTATCATCGCTTTACTCTGGATTCTGACAATTACATCAAGGCCATGCGACTCTTTGTTGGTGATCCTGTCTGGACTCCTCACAACCGTCCCAATGATCATCTTCCCGCCAGGAAGGAGTATCTCAGAAGTTTTGTGGAGAAGGAAGCTGGTAATCAGGCCGTTAACGCTGCAGCTTGA 711 45.85 MQFNFYEQPDSPLNWTNIGASAMSLATLGSRRLQLTMAVPDKDPREEVIQAWYMDDSDEDQRLPHHLEPKQYLSLQQLDELGVLSWRLDADIYETDEELKKIRRDRNYSYMDFCEVCPEKLPNYEEKIKSFYEEHLHTDEEIRYCVAGSGYFDVRDLNDKWIRIWVKKGAMIVLPAGIYHRFTLDSDNYIKAMRLFVGDPVWTPHNRPNDHLPARKEYLRSFVEKEAGNQAVNAAA 236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4641607 4645810 - CcPI632755_05g005710.1 Cco05g0571 178199

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0571 236 Gene3D Jelly Rolls 38 225 IPR014710 -
Cco05g0571 236 SUPERFAMILY RmlC-like cupins 50 222 IPR011051 -
Cco05g0571 236 PANTHER ACIREDUCTONE DIOXYGENASE 48 231 IPR004313 GO:0006555(PANTHER)|GO:0010309(PANTHER)|GO:0010309(InterPro)
Cco05g0571 236 FunFam 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 48 225 - -
Cco05g0571 236 Hamap Acireductone dioxygenase [ADI1]. 49 212 IPR027496 GO:0016491(InterPro)|GO:0019509(InterPro)
Cco05g0571 236 CDD cupin_ARD 75 204 IPR004313 GO:0010309(InterPro)
Cco05g0571 236 Pfam ARD/ARD' family 50 204 IPR004313 GO:0010309(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0571 K08967 - - csv:101222292 403.29
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0571 Cco-Chr5:4641607 Cco06g0657 Cco-Chr6:7268624 2.20E-74 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g555 . . Bda03g00867 . . . . . . . . . Car06g01188 . Sed02g1341 . . Bhi01g00761 Tan10g0792 Cmetu06g0848 Lac12g2248 Hepe05g1585 . Lcy11g1580 . . . . . . . . . Cone7ag0277 . . Csa02g01124 . Cme06g00576 . . . . . . . . . . . . . . . . . . . . . . . . Cla05g00510 Cam05g0561 Cec05g0573 Cco05g0571 Clacu05g0558 Cmu05g0529 Cre05g0598 Lsi09g01292 Csa03g01292 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002489 2 2 1 1 1 2 3 2 2 1 2 2 2 2 2 2 2 3 3 2 2 2 2 2 2 2 2 3 2 2 60