Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0575 ATGGGTAATGCTGATTTTGAATGCCCTCACAGAGTAGCCATTCCTCCAAAAAAGCCCTTCTTCCACTCCTTATCTTCCAATCTCAAAGAAACCTTCTTCCCCGATGACCCTTTCAAACAATTCAAAAACCAACCTTTGCCCACCCAAATCCTTCTCTGGCTTAAATACTTCATCCCCTTTCTTGATTGGGCTCCTCGTTACACTTTCGACTTCTTCAAAGCCGACCTCGTCGCTGGTATCACCATCGCCAGTTTGGCCGTCCCTCAGGGTATCAGCTATGCCAATCTCGCCAGTATCCCACCCATCATCGGGCTTTATTCCAGCTTCATCCCACCCTTGGTATACGCCATGTTCGGAAGCTCGAAAGATATAGCAGTGGGTACGGTGGCAGTAGCTTCCTTGCTTATGTCTGCCATGTTGGGGAAGGAAGTCAACCCGGTAGAGCATCCAAAGCAATACGTTCAATTGGTTTTCACTGCCACCTTCTTTGCAGGGGTTTTTCAGGCTTCTCTCGGGTTTCTCAGATTAGGGCTCATTGTGGACTTTTTGTCGCATGCAACAATAGTGGGCTTCATGGGTGGTGCAGCAACCGTGGTTTGTCTTCAGCAATTGAAAGGCATAACGGGATTGGTTCATTTTACGCATGAGACTGATATTGTATCCGTTATGCGCTCTCTTTTCTCTCAAATTCACAAGTGGAGATGGGAAAGTATTGTGTTGGGTTGCTGTTTTCTCTTCTTTCTCCTCCTCACTAGATACTTGAGCAAGAAGAAAGCAATCTTCTTTTGGATAAATGCATTGGCGCCTTTGACTTCGGTCATCTTGGGAAGTCTTCTCGTTTACTTAACCCATGCTGAAAAGCATGGAGTTCAAGTGATTGGGAATTTGAAGAAAGGGTTGAATCCCCCTTCTGTATCTGATTTAGTTTTTGGATCCCCTCATCTCGCTGTTGCCATCAAAACAGGGATCATCATCGGAATCATTGGCCTCGCTGAAGGAGTTGCAGTGGGAAGAAGTTTTGCTGCTTTTAAGAACTACCACATTGATGGAAACAAGGAGATGATAGCATTTGGGATGATGAACATTGTTGGTTCTTGCACTTCTTGCTACCTTACTGCAGGACCATTTTCGAGGACTGCGGTGAATTTCAATGCAGGATGTAAAACTGCGGTCTCAAATATTGTCATGGCAATTGCTCTGATGATCACTCTGTTGTTTTTGACGCCATTTTTTCATTACACACCCCTGGTGGTGCTTTCCTCCATAATCATCACTGCTATGCTCGGCCTAATCAACTATGAAGAAGTCATCCACCTTTGGAAAATTGACAAATTTGACTTTGTCGTCTGCCTCGGTGCATATATCGGTGTCGTCTTTGGCAGCGTTGAAACGGGCTTGATCGTGGCGATTACGCTCTCTTTGTTAAGGGTGCTTCTAATCATCGCGAGGCCAAGAACTTTAGTATTAGGCAACATTCCCAACTCGACAATTTACAGAAGCATCGATCAATACCCAACAGCCAAAAATGTGCCTGGAATTCTCATCCTCCAATTGGAGGCCCCAATCTATTTTGCCAACTCAAACTACCTGAGAGAAAGGCTTTCAAGGTGGATTACAGATGAAGAACAGAGGATAAAATCATCTGGAGAAACCAGCTTGCAGTATATAATTCTAGATATTTCCGGCGTAAGTAGCATTGACTCAAGTGGAATCAGCATGCTTGAAGAGGTTAAGAAGAGTACTGAAAGAAAGGGTCTCAAACTTGTGCTTGCAAATCCAAGAAGTGAAGTGATAAAAAAGTTAAAGGAAGCAAAGTTCATCGAGGCAATCGGACAGGAATGGATCTATCTTACAGTGGGAGAGGCTGTAACAGCTTGCAACTTCATGCTCCACACTTGCAAGCCAAATCCTGTTGCTGCTGAATTAGATTCACCTGTGTAG 1941 44.46 MGNADFECPHRVAIPPKKPFFHSLSSNLKETFFPDDPFKQFKNQPLPTQILLWLKYFIPFLDWAPRYTFDFFKADLVAGITIASLAVPQGISYANLASIPPIIGLYSSFIPPLVYAMFGSSKDIAVGTVAVASLLMSAMLGKEVNPVEHPKQYVQLVFTATFFAGVFQASLGFLRLGLIVDFLSHATIVGFMGGAATVVCLQQLKGITGLVHFTHETDIVSVMRSLFSQIHKWRWESIVLGCCFLFFLLLTRYLSKKKAIFFWINALAPLTSVILGSLLVYLTHAEKHGVQVIGNLKKGLNPPSVSDLVFGSPHLAVAIKTGIIIGIIGLAEGVAVGRSFAAFKNYHIDGNKEMIAFGMMNIVGSCTSCYLTAGPFSRTAVNFNAGCKTAVSNIVMAIALMITLLFLTPFFHYTPLVVLSSIIITAMLGLINYEEVIHLWKIDKFDFVVCLGAYIGVVFGSVETGLIVAITLSLLRVLLIIARPRTLVLGNIPNSTIYRSIDQYPTAKNVPGILILQLEAPIYFANSNYLRERLSRWITDEEQRIKSSGETSLQYIILDISGVSSIDSSGISMLEEVKKSTERKGLKLVLANPRSEVIKKLKEAKFIEAIGQEWIYLTVGEAVTACNFMLHTCKPNPVAAELDSPV 646
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4694061 4699512 + CcPI632755_05g005750.1 Cco05g0575 178203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0575 646 Gene3D STAS domain 483 628 IPR036513 -
Cco05g0575 646 Pfam STAS domain 504 622 IPR002645 -
Cco05g0575 646 CDD STAS_SulP_like_sulfate_transporter 504 619 - -
Cco05g0575 646 ProSitePatterns SLC26A transporters signature. 101 122 IPR018045 GO:0008271(InterPro)|GO:0008272(InterPro)
Cco05g0575 646 FunFam Sulfate transporter 31 483 629 - -
Cco05g0575 646 Pfam Sulfate permease family 72 451 IPR011547 GO:0016020(InterPro)
Cco05g0575 646 SUPERFAMILY SpoIIaa-like 506 626 IPR036513 -
Cco05g0575 646 ProSiteProfiles STAS domain profile. 503 626 IPR002645 -
Cco05g0575 646 NCBIfam sulfate permease 59 622 IPR001902 GO:0016020(InterPro)|GO:0055085(InterPro)
Cco05g0575 646 PANTHER SULFATE TRANSPORTER 27 626 IPR001902 GO:0005887(PANTHER)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0575 Cco-Chr5:4694061 Cco06g1175 Cco-Chr6:20996208 3.10E-200 dispersed
Cco05g0575 Cco-Chr5:4694061 Cco09g0702 Cco-Chr9:6307169 5.90E-284 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0575 K17471 - csv:101203205 1185.63