Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco05g0576 | ATGAAAACTTTAAGCTCCCCTCTCTCAAAATCTCTCTTCCTCATCTCCACCCTCATCCTCCTCTCCCAACCTTCCCATCAAGCAACTCCGTCACCGACGCCATTTCTCCGAAACCCCAGACTTCTTAAGGCCTACTCCGCTCTCCAAGCTTGGAAACATGCCATCACCGCCGACCCGACCAACTTCACCTCCGATTGGTACGGCCCCAATGTCTGCAACTACTCCGGTGTCTTCTGCGCCCCCGCCCCCGACGACCCCGACATCCTCACCGTCGCCGGGATCGACCTCAACCACGCCAACCTCTCGGGCACCCTGCCCGACGACCTCGGCCTCCTCACCGACCTTGCTCTGTTCCACATCAACTCCAATCGCTTCTGCGGCACTATCCCCGATTCCTTCCGGTGCCTCACTCTTCTCTTCGAGCTCGATATCAGCAACAATGACTTCTCCGGCGAATTCCCCTCTGTAATTCTCTCTCTCCCAGTTCTCAAATTCCTCGATATTCGATTCAACAGATTCCATGGCGATCTCCCTTCTCCCCTGTTTGACTTGAAACTCGATGCTCTGTTCATCAACAACAACGACTTCAAATTTTCCCTGCCGGAAAATATCGGCAATTCCCCTGTTTCTGTTCTGGTTTTTGCTAATAACAACATCAATGGCTGTCTCCCCTCTGGTTTATCCAATATGAACAACACACTCAATGAAATTATAATCACGAATAGTGGGTTGGTTGGGTGTTTACCGCCGGAAATTGGGTCTTTGAGCAAGCTCACCGTCTTCGATGTTAGTGACAACAATCTCGTCGGACCATTGCCGGAGACGATGGCTGGAATGAAGAAATTGGAGCAGCTAAATGTGGCACATAACCAATTATCCGGCGAGATTCCAGCGAGTATTTGTTCGTTGCCGAAATTGCAGAATTTCACTTACTCGTATAATTTCTTCTGCAGTGAGCCGCCGGAGTGCCTGAAACTTCAGGCCAGTGATGACCAGAAAAATTGTTTGCCGGAAAGGCCACTGCAACGTTCGCCGGAGGAATGCAAAGCTTTCTACTCTTACCCTGTTGATTGCGGCGTCTTTGGGTGTACTCGTCGGCCGCCACCTCCGCCGCCATCTTATTGGTGA | 1128 | 51.24 | MKTLSSPLSKSLFLISTLILLSQPSHQATPSPTPFLRNPRLLKAYSALQAWKHAITADPTNFTSDWYGPNVCNYSGVFCAPAPDDPDILTVAGIDLNHANLSGTLPDDLGLLTDLALFHINSNRFCGTIPDSFRCLTLLFELDISNNDFSGEFPSVILSLPVLKFLDIRFNRFHGDLPSPLFDLKLDALFINNNDFKFSLPENIGNSPVSVLVFANNNINGCLPSGLSNMNNTLNEIIITNSGLVGCLPPEIGSLSKLTVFDVSDNNLVGPLPETMAGMKKLEQLNVAHNQLSGEIPASICSLPKLQNFTYSYNFFCSEPPECLKLQASDDQKNCLPERPLQRSPEECKAFYSYPVDCGVFGCTRRPPPPPPSYW | 375 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 4704217 | 4705344 | + | CcPI632755_05g005760.1 | Cco05g0576 | 178204 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco05g0576 | 375 | SUPERFAMILY | L domain-like | 44 | 326 | - | - | |
Cco05g0576 | 375 | FunFam | Leucine-rich repeat extensin-like protein 1 | 45 | 206 | - | - | |
Cco05g0576 | 375 | Pfam | Leucine rich repeat | 233 | 292 | IPR001611 | GO:0005515(InterPro) | |
Cco05g0576 | 375 | Pfam | Leucine rich repeat N-terminal domain | 46 | 79 | IPR013210 | - | |
Cco05g0576 | 375 | Gene3D | Ribonuclease Inhibitor | 210 | 350 | IPR032675 | - | |
Cco05g0576 | 375 | Gene3D | Ribonuclease Inhibitor | 43 | 209 | IPR032675 | - | |
Cco05g0576 | 375 | PANTHER | LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED | 26 | 369 | IPR051582 | - | |
Cco05g0576 | 375 | Pfam | Leucine Rich Repeat | 139 | 159 | IPR001611 | GO:0005515(InterPro) | |
Cco05g0576 | 375 | FunFam | LRR receptor-like serine/threonine-protein kinase ERECTA | 231 | 319 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco03g1658 | Cco-Chr3:31231963 | Cco05g0576 | Cco-Chr5:4704217 | 7.80E-27 | dispersed | |
Cco05g0576 | Cco-Chr5:4704217 | Cco07g0244 | Cco-Chr7:2512977 | 1.20E-50 | dispersed | |
Cco05g0576 | Cco-Chr5:4704217 | Cco06g1179 | Cco-Chr6:21068478 | 1.70E-36 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco05g0576 | - | - | - | 0.0 |