Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0576 ATGAAAACTTTAAGCTCCCCTCTCTCAAAATCTCTCTTCCTCATCTCCACCCTCATCCTCCTCTCCCAACCTTCCCATCAAGCAACTCCGTCACCGACGCCATTTCTCCGAAACCCCAGACTTCTTAAGGCCTACTCCGCTCTCCAAGCTTGGAAACATGCCATCACCGCCGACCCGACCAACTTCACCTCCGATTGGTACGGCCCCAATGTCTGCAACTACTCCGGTGTCTTCTGCGCCCCCGCCCCCGACGACCCCGACATCCTCACCGTCGCCGGGATCGACCTCAACCACGCCAACCTCTCGGGCACCCTGCCCGACGACCTCGGCCTCCTCACCGACCTTGCTCTGTTCCACATCAACTCCAATCGCTTCTGCGGCACTATCCCCGATTCCTTCCGGTGCCTCACTCTTCTCTTCGAGCTCGATATCAGCAACAATGACTTCTCCGGCGAATTCCCCTCTGTAATTCTCTCTCTCCCAGTTCTCAAATTCCTCGATATTCGATTCAACAGATTCCATGGCGATCTCCCTTCTCCCCTGTTTGACTTGAAACTCGATGCTCTGTTCATCAACAACAACGACTTCAAATTTTCCCTGCCGGAAAATATCGGCAATTCCCCTGTTTCTGTTCTGGTTTTTGCTAATAACAACATCAATGGCTGTCTCCCCTCTGGTTTATCCAATATGAACAACACACTCAATGAAATTATAATCACGAATAGTGGGTTGGTTGGGTGTTTACCGCCGGAAATTGGGTCTTTGAGCAAGCTCACCGTCTTCGATGTTAGTGACAACAATCTCGTCGGACCATTGCCGGAGACGATGGCTGGAATGAAGAAATTGGAGCAGCTAAATGTGGCACATAACCAATTATCCGGCGAGATTCCAGCGAGTATTTGTTCGTTGCCGAAATTGCAGAATTTCACTTACTCGTATAATTTCTTCTGCAGTGAGCCGCCGGAGTGCCTGAAACTTCAGGCCAGTGATGACCAGAAAAATTGTTTGCCGGAAAGGCCACTGCAACGTTCGCCGGAGGAATGCAAAGCTTTCTACTCTTACCCTGTTGATTGCGGCGTCTTTGGGTGTACTCGTCGGCCGCCACCTCCGCCGCCATCTTATTGGTGA 1128 51.24 MKTLSSPLSKSLFLISTLILLSQPSHQATPSPTPFLRNPRLLKAYSALQAWKHAITADPTNFTSDWYGPNVCNYSGVFCAPAPDDPDILTVAGIDLNHANLSGTLPDDLGLLTDLALFHINSNRFCGTIPDSFRCLTLLFELDISNNDFSGEFPSVILSLPVLKFLDIRFNRFHGDLPSPLFDLKLDALFINNNDFKFSLPENIGNSPVSVLVFANNNINGCLPSGLSNMNNTLNEIIITNSGLVGCLPPEIGSLSKLTVFDVSDNNLVGPLPETMAGMKKLEQLNVAHNQLSGEIPASICSLPKLQNFTYSYNFFCSEPPECLKLQASDDQKNCLPERPLQRSPEECKAFYSYPVDCGVFGCTRRPPPPPPSYW 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4704217 4705344 + CcPI632755_05g005760.1 Cco05g0576 178204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0576 375 SUPERFAMILY L domain-like 44 326 - -
Cco05g0576 375 FunFam Leucine-rich repeat extensin-like protein 1 45 206 - -
Cco05g0576 375 Pfam Leucine rich repeat 233 292 IPR001611 GO:0005515(InterPro)
Cco05g0576 375 Pfam Leucine rich repeat N-terminal domain 46 79 IPR013210 -
Cco05g0576 375 Gene3D Ribonuclease Inhibitor 210 350 IPR032675 -
Cco05g0576 375 Gene3D Ribonuclease Inhibitor 43 209 IPR032675 -
Cco05g0576 375 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 26 369 IPR051582 -
Cco05g0576 375 Pfam Leucine Rich Repeat 139 159 IPR001611 GO:0005515(InterPro)
Cco05g0576 375 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 231 319 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1658 Cco-Chr3:31231963 Cco05g0576 Cco-Chr5:4704217 7.80E-27 dispersed
Cco05g0576 Cco-Chr5:4704217 Cco07g0244 Cco-Chr7:2512977 1.20E-50 dispersed
Cco05g0576 Cco-Chr5:4704217 Cco06g1179 Cco-Chr6:21068478 1.70E-36 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0576 - - - 0.0