Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0578 ATGGCAACCTTGATGCATTCTGAATCTCGGCGCTTATATTCTTGGTGGTGGGATAGCCATATTAGCCCCAAAAATTCAAAATGGCTACAGGAGAATCTTACAGACATGGATGCCAAAGTAAAAGCAATGATCAAACTCATCGAAGAAGATGCAGACTCATTTGCGAGAAGAGCAGAAATGTACTATAAGAAACGTCCAGAGCTTATGAAATTAGTTGAGGAATTCTACCGAGCCTACCGTGCTTTAGCTGAAAGATATGACCATGCAACTGCGGAGCTTCGTCATGCACATAAAACCATGGCTCAAGCATTTGACAACCAAATGCCTCCTTTTATGTTTTCTGATGAGTCTTCTGTTTCTGAAGCTGAATCCCACACACCAGAAATCCACCTCCCAAATCATGCACTCCACAACAAAGATGACTTGCACAAGGAGTTGGGGAGTTCATCGTCAACGAACCAACATCCATTAAGAATGGAAAGAGATAATGCTGGGGAATCTAATTCTTGCTTAAGTAAAGGGGGTTTGAAACAGCTCAATGAGATGTTCGCATCAAGAGAAAATGTGCCAGAAAATTTAGAGGTTAGTGAGGGAAGCACTGTATCGCAATTAGTTTTTCATGAAGACCAAAACTTGCAAAATGTAGAATACCCTCAGTTATCAAGGAAAATTAATGGTCTCAACTCTCAGGTCCTGTGTGAGTCAGAAAGTAATGAAAAATTGGATGCTGAGCTTCAAAATTTAAGAAAAAGACTGAATCAGATGGAAGCTGAAAAGGAAGCTTTCTTTCTTAAATACCAGAATTCTTTGGAGAAGTTATCCAGCCTAGAGAATGAACTTAGTTCTGCTCAAAAGGATGCTGGTGGACTTGACGAAAGAGCGAGCAAAGCTGAAATTGAAATAAAAATATTGAAGGAAGCCCTTCTAGATCTGAAAGCAGAGAAGAATGCTAGCCTTCTACAATATAATCAATGTTTGCAAAAGATATCTAGCTTAGAAAATCAATTATCTGTAGCCCAACAAGATGCTGAAGGACAGAATGAGAGAGCTGCTAAGGCAGAAATTGAAATTCAGAACCTTGAGCAACAACTTTCCAGATTAGCAGCTGAAAAGGAGGTCAGTCTTCTTCAGTATGAACGATGCCTAAAGAAGATACCTGCCTTAGAGAACAAAATCTCTCTCTCTGAAGATTATGCAAGAATGCTTGATGAACAAATAAAAAGTTCAGAAACTGAAGTGGAAGCACTGAATAGAGCTCTTGTTGAACTGAATAAAGAGAAGGAAATAGTATGTCGACAATATGAGCAGTGCTTGGAGAAAATTGCGAAGATGGAAACTGAAATATCTTATGCTCAAGCTGATGCCCAACGTCTGAAAGGTGAACTTGTGATGGCCAATGCAAAACTGGAGACAACAGAAGAAAGGTGTGCTCATTTGGAGCAGTCGAACCATTCACTGCAGTTTGAGGCAGACAAACTTGTACAGAAGATTGCTATGAAGGATCAAGAGCTTGCAGAAAAGCAAGATGAGTTGAAGAAACTGCAGAGTCTAATGAACGAGGAGCAGTCCCGATTTGTACAAGTCGAGAACACTCTCCACACTCTGCAGAAGTTACATTGTCAATCACAGGAGGAGCAGAGAGCTCTGACCTTGGAGCTTAAAAATGGTCTCATGATGCTGAAGGATTTGGATATATGCAAACATGGCATGGAGGAAGACCTTCAACGAGTTAAGGATGAAAACAAAATATTGAATGAACTGCATTTTTCTTCCAATACTTCAATGAAGAATTTAGGGGATCAATTATCTGGCTTGAAGGAGATGAAAGAGAAGCTTGAAGAAGTTGTTTCCCAGAAAGAAGAGCAGAGCAGCTTGCTTGAGAAAGAGATCCATCATTTGAGAGAAGAAATCAAGGGTTTGAGTGGAAGATACCAGGGCATAATGAGACAATTGGAGGCCGTAGGGTTGGATCCTCACTCCCTTGAATCTTCTGTAAAGGAATTTCAAGAGGAAAATGCCAAGCTGAGGGAGGCCTGTGAAAACGACAGGAACAAGATAGAAGCACTTTATGAAAAACTTAGTTATATGGATGAACTTGCAAATGAAAATTCGATTCTCAAGGTATCTCTGGCTGAATTGAATGCTGAATTGGAGAGGCTAAGGGAGAAAGTCAAGGAATCCCAGGACCTTTCCCAATTTACCCAGGGAGAAAAAACTACTCTTGTTGCAGAGAAATCTTCCTTGCTTTCACAATTGCAGAATGTAACTGAGAATATGTTGAAACTTTTAGAGAAGAACACATTGCTGGAAGACTCCCTATCTAGTGCAAATAAAGAGCTTGAAGGTTTAAGGGCAAAATCAAAGGGCTTGGAAGAATTCTGCCAGTTGCTCAAGGATGAGAGGTCCAATCTTTTGAATGAAAGAGGCACACTGGTGGCTCAGCTTGAAAACATTGAACTGAGACTAGGAAACCTGGAAAAGAGGTTTACGAATCTAGAAGAGAAATGTGCTGATCTGGAAAATGACAAAGATTCTGCCTTACATCAAGTTGAAGAATTGAGGTTTTCCCTTCTCATGGAAGAACAAGAGCATACAAGTTACAAGCAGTTGACTGAGGCCAGACTTGCTGGTTTGGAGAACAATGTCCATAACCTACGAGAAGAAAGTAGAGTGAGCAAGGAAGAAATTGAAGAGCTACTAGACAAGGCTGTGAATGCCCAGGTTGAAATCTATATATTGCAGAAGTTTGTTGAGGACTTGGAAGAGAAAAATCTTTCTTTGCTTATTGAATGTGAACAATATGAAGAGGAATCCAAGTTATCAGATAAACTTATTGCTGAATTGGAAGGTGAAAATCTTGAGCAACAAGTTGAAGTAGAATTTATGTACAATGAAATCGATAAATTAAGAGCAGGAATCCGTAAGGTATTAATGGCACTTCAAATTGATCAAGATTGTGGGCAGGGAAATATGAAAGAAGAGAGAATTCTGATAGTGGATATTTTGGCCAGAATTGAGGATTTGAAAACTTCTGTGTTCAAAAACAAGGACAAGAAGCAGCAATTGCTAGTTCAGAACTCGGTTTTATTAACTCTTCTCAAGCAACTGAGTTTAGAGAGTGAAGAACTTCTGTCAGAGAAAGAGAACATTGTGCAGGAGTTAAAGATCATGAAGGGCCAACTAGCAATGCATGAAAATGACAAGCATGAGCTTCTGAAGACGAAAAGCCAGTTGATGATGCAAGTTAGCCAGTGGGAGCAGCATGAGCTACTGCTGAAGGCAGAGATTGAAACTCTAAATGAGAAGCTAATAAATCTGCAAGGGGTCTGTCTCATGCTGGAAAAAGAAAATTGTAATGTTGCTGAAGAAAAGAAATCATTGCTCAAGAAATTTCTGGACCTTGAAGAGGACAAGAATATTATTCAACAAGAGCAGCAGAATTTAATCATCCAGGAAGTGATTGCTTTCAACATCCTATCCTCAATTTTTGAAAGCTTCAAAACAGAGAAGTTCTTGGAAATAGAAAATCTTGTTCAAGACATCTCTCATCTCCAAGTGGTTAATTCTGATACAAGGGAAGAAGTTAGAAAGTTGGCACAGAAATTTCAGTTGAAGGAAGTGGAAAATTTGCATTTAAATGGATCAGTACAGAAATTGGTCAAGGACCTACATGAAGCAGAAGACTTGAACGATGAACTTAACTATCAAATTTTAGTTGGAAACGATTTTCTGAGGCTGAAGGCCCAAGAGCTTTCTGAAACAGAAGAGGAACTTAAAAATTCACAAAACTTCAACATGAAATTGTCTGGGGCAGTCGAGGAGCTGAAGATGGAAGGTAAAGAATCAACTATGATCAGACACAGACTACAGAATGAGAATCGTGAACTTTCTGAAAAGTGCTTAAGCCAGGAGAATGATATTCAATGCCTCTGTGAAGTAAATGAGAATTTAAAATCTGAAGTTGATTTGTTGAATGAGGAGGTCGAGAAATGCAAAATTAGAGAGGAGTGTCTGAGTTTAGAGCTACAGGAAAGAAGAGATGAATTTGAGCTCTGGGAGGCTGAAGCCACAACATTTTACTTTGATCTTCAAATCTCATCGATACGGGAGGTTTTATATGAACACAAGGTTCATGAACTTGCACAAGCTTGTGAAAATGCTGGGGATGAGAACGCTGCAAAAACTATAGAGATTGAACAACTCAGAGAAAGAGTAAGTTTCCTGGAAACTGAAATCAGAGAAATGGAGGCACAGTTGTCTGCATATAAGCCCGCCATAGCTTCTCTGAGGGAGGATGTAGAATCACTCAAGCATATTGTTCTTCCTCAGACTAGGGATACCTGTAGAGGTTTTATAGGAGAAGAGGGCGAGGAAACCACAATTCATGTTCATCACAGGAGCTGTAATGTCCACCACAGAGATGAGATATTGGATTTGCAGAAGATTGGGGCCATGATAAAAGCAGTTGAGAAGGCTGTGATCAAGGAAAAGGAGAAACTCAACAAAGAAGCTGCTGACAAACATGTTAAAGACTTCAAATCAGGAGCCTCACGTCAGAAAGTGACAATGAAGGAAGGGAAAGATTTGAGGGATGAAATTACTGGCAATCAGAAGGCAAGAAAGAATAAACCCGACAATGGAATATTAATGAAGGATATTCCACTGGATCATGTATCAGATAGTTCTTTCCAGAGAAGAAGCAAAAGGGAAAGTAGTGAAACCAATGATCAAATGCTTAAGTTGTGGGAAACTGCTGAGCAGGATAGCGACCAGAATTTGTTTGATAGCTCGCCACCACAAAGCCCGCCAGACCCACAAGTTGAGTACCCGCAGTTGGAAATTGTAGAACATAAGAGTCCAGATTTTTCTTCAGAACTGCAAGCAGAGAAGGAGTTGAGCATTGATAGATTGGAGCTATCACCCAGCATTAGAGAACGAATTCGAAGAGGCCGAAAAGGAAAGCTTTTAGAGAGACTTGATTCAGATGTCATTCAGTTGACAGGTCTTCTAACAAGCGTTCAAGATTTGAAAAAGAGAATTGAAGTGAACACCCTTGAAATGGCTAGAAACAATGAATATGACACAGTCGAGAAACATATAAAAGAAGTTGAGGAAGCCATTTTTCAGCAAGTAAATATCAATGGTCAACTGAAGCAGAATTTGGAACGCAGTCCCTCATCTTTCGAGCGGAGACCCTCAGTTGAACTCGAGGCAACTGGAAACATCCCCTTAAGCAAACTAACAGAACAGGCACAAAGAGGATCCGAGAAGATAGGAAAACTACAATTCGAGGTACAGAACATTCAGCGCGTTGTGCTGAAACTTGAAGCTGAGAAGAAAAGAAAAGGGAAGAACAGATTCTCCAAGAGTAAACCTGGTGTTATTCTGAGAGACTTCATCTACAGAAGCGGAAAACGCAGTGAAAGACGAAAGAAGCCATGTTCTTGTGGATGCACAAGGCCTACTACTCATGGAGACTGA 5481 40.03 MATLMHSESRRLYSWWWDSHISPKNSKWLQENLTDMDAKVKAMIKLIEEDADSFARRAEMYYKKRPELMKLVEEFYRAYRALAERYDHATAELRHAHKTMAQAFDNQMPPFMFSDESSVSEAESHTPEIHLPNHALHNKDDLHKELGSSSSTNQHPLRMERDNAGESNSCLSKGGLKQLNEMFASRENVPENLEVSEGSTVSQLVFHEDQNLQNVEYPQLSRKINGLNSQVLCESESNEKLDAELQNLRKRLNQMEAEKEAFFLKYQNSLEKLSSLENELSSAQKDAGGLDERASKAEIEIKILKEALLDLKAEKNASLLQYNQCLQKISSLENQLSVAQQDAEGQNERAAKAEIEIQNLEQQLSRLAAEKEVSLLQYERCLKKIPALENKISLSEDYARMLDEQIKSSETEVEALNRALVELNKEKEIVCRQYEQCLEKIAKMETEISYAQADAQRLKGELVMANAKLETTEERCAHLEQSNHSLQFEADKLVQKIAMKDQELAEKQDELKKLQSLMNEEQSRFVQVENTLHTLQKLHCQSQEEQRALTLELKNGLMMLKDLDICKHGMEEDLQRVKDENKILNELHFSSNTSMKNLGDQLSGLKEMKEKLEEVVSQKEEQSSLLEKEIHHLREEIKGLSGRYQGIMRQLEAVGLDPHSLESSVKEFQEENAKLREACENDRNKIEALYEKLSYMDELANENSILKVSLAELNAELERLREKVKESQDLSQFTQGEKTTLVAEKSSLLSQLQNVTENMLKLLEKNTLLEDSLSSANKELEGLRAKSKGLEEFCQLLKDERSNLLNERGTLVAQLENIELRLGNLEKRFTNLEEKCADLENDKDSALHQVEELRFSLLMEEQEHTSYKQLTEARLAGLENNVHNLREESRVSKEEIEELLDKAVNAQVEIYILQKFVEDLEEKNLSLLIECEQYEEESKLSDKLIAELEGENLEQQVEVEFMYNEIDKLRAGIRKVLMALQIDQDCGQGNMKEERILIVDILARIEDLKTSVFKNKDKKQQLLVQNSVLLTLLKQLSLESEELLSEKENIVQELKIMKGQLAMHENDKHELLKTKSQLMMQVSQWEQHELLLKAEIETLNEKLINLQGVCLMLEKENCNVAEEKKSLLKKFLDLEEDKNIIQQEQQNLIIQEVIAFNILSSIFESFKTEKFLEIENLVQDISHLQVVNSDTREEVRKLAQKFQLKEVENLHLNGSVQKLVKDLHEAEDLNDELNYQILVGNDFLRLKAQELSETEEELKNSQNFNMKLSGAVEELKMEGKESTMIRHRLQNENRELSEKCLSQENDIQCLCEVNENLKSEVDLLNEEVEKCKIREECLSLELQERRDEFELWEAEATTFYFDLQISSIREVLYEHKVHELAQACENAGDENAAKTIEIEQLRERVSFLETEIREMEAQLSAYKPAIASLREDVESLKHIVLPQTRDTCRGFIGEEGEETTIHVHHRSCNVHHRDEILDLQKIGAMIKAVEKAVIKEKEKLNKEAADKHVKDFKSGASRQKVTMKEGKDLRDEITGNQKARKNKPDNGILMKDIPLDHVSDSSFQRRSKRESSETNDQMLKLWETAEQDSDQNLFDSSPPQSPPDPQVEYPQLEIVEHKSPDFSSELQAEKELSIDRLELSPSIRERIRRGRKGKLLERLDSDVIQLTGLLTSVQDLKKRIEVNTLEMARNNEYDTVEKHIKEVEEAIFQQVNINGQLKQNLERSPSSFERRPSVELEATGNIPLSKLTEQAQRGSEKIGKLQFEVQNIQRVVLKLEAEKKRKGKNRFSKSKPGVILRDFIYRSGKRSERRKKPCSCGCTRPTTHGD 1826
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4713015 4719783 - CcPI632755_05g005780.1 Cco05g0578 178206

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0578 1826 Pfam KIP1-like protein 14 87 IPR011684 GO:0003779(InterPro)
Cco05g0578 1826 Coils Coil 1286 1334 - -
Cco05g0578 1826 Coils Coil 808 849 - -
Cco05g0578 1826 Coils Coil 696 737 - -
Cco05g0578 1826 Coils Coil 1096 1116 - -
Cco05g0578 1826 Coils Coil 441 531 - -
Cco05g0578 1826 MobiDBLite consensus disorder prediction 1511 1547 - -
Cco05g0578 1826 Coils Coil 868 902 - -
Cco05g0578 1826 Coils Coil 399 433 - -
Cco05g0578 1826 Coils Coil 1216 1236 - -
Cco05g0578 1826 SUPERFAMILY Tropomyosin 218 443 - -
Cco05g0578 1826 PANTHER PROTEIN NETWORKED 4A 346 1058 IPR051861 -
Cco05g0578 1826 Coils Coil 567 587 - -
Cco05g0578 1826 Coils Coil 231 314 - -
Cco05g0578 1826 Gene3D - 558 702 - -
Cco05g0578 1826 MobiDBLite consensus disorder prediction 143 172 - -
Cco05g0578 1826 Coils Coil 1033 1067 - -
Cco05g0578 1826 Coils Coil 595 643 - -
Cco05g0578 1826 MobiDBLite consensus disorder prediction 1588 1607 - -
Cco05g0578 1826 Coils Coil 1124 1144 - -
Cco05g0578 1826 Coils Coil 665 692 - -
Cco05g0578 1826 Coils Coil 752 786 - -
Cco05g0578 1826 Coils Coil 1241 1261 - -
Cco05g0578 1826 Coils Coil 322 377 - -
Cco05g0578 1826 MobiDBLite consensus disorder prediction 1511 1575 - -
Cco05g0578 1826 MobiDBLite consensus disorder prediction 1558 1575 - -
Cco05g0578 1826 ProSiteProfiles Networked (NET) actin-binding (NAB) domain profile. 13 93 IPR011684 GO:0003779(InterPro)
Cco05g0578 1826 Coils Coil 917 965 - -
Cco05g0578 1826 Coils Coil 1384 1418 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0578 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0006 Cco-Chr3:95200 Cco05g0578 Cco-Chr5:4713015 1.80E-32 dispersed
Cco05g0578 Cco-Chr5:4713015 Cco11g1507 Cco-Chr11:27894135 2.10E-28 dispersed
Cco10g0732 Cco-Chr10:10823710 Cco05g0578 Cco-Chr5:4713015 6.30E-32 transposed
Cco05g0578 Cco-Chr5:4713015 Cco07g0043 Cco-Chr7:408177 1.50E-138 wgd
Cco05g0578 Cco-Chr5:4713015 Cco09g0700 Cco-Chr9:6296561 4.10E-72 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g541 . . . . . Bpe14g01206 . . . . Cma06g01386 Cma14g01737 Car06g01195 Car14g01566 Sed02g1335 Cpe08g00276 Cpe03g01456 Bhi01g00773 Tan10g0800 Cmetu06g0678 . . . . . . . . . . . . . . . Lsi05g01629 . . Cme06g00583 Blo02g00526 Blo07g00230 Bda11g00592 Bda13g00105 . Bpe13g00592 Bma02g00829 . . Cmo06g01392 Cmo14g01776 . . . . . . . . . . . . . Cla05g00517 Cam05g0568 Cec05g0580 Cco05g0578 Clacu05g0565 Cmu05g0536 Cre05g0605 . Csa03g01300 Chy06g00554 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003822 2 2 2 1 2 1 2 1 1 1 1 1 4 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 2 44