Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0580 ATGCCCTGTGGTATGGGTAAAAAAGAAGGAGGAATCTTGGCTCATCCATCCGTTGGATACGTGCATACAGTGAAATCCCCGCGCTTTTCTCTTCATCGTTCCCAAAATTCTGTGGTGCTACGATTCCCATTGCTGGTGGCTTCTTTTTTAGAAAATTTGGTTTTCGATTTTTCGTTGCCTTGCAATTCTCTGTTCTTCCATAACCATTTTCCTGTCCTGGTCTGCGGGTCCGATTATGCTGAGAGGTCTAGAATTCCTTGTATTCGAGGTGTACTATTTGAGTTATCTGTGTTGATCTTAGCAATGAATTCGAAAGGCAATGATATGGGGGGTTCTCCGGTCCCAAAGGAGACACAGAGCCTGGCTGGTATGAGAAGCATTAGCAGCAAAGATATGATATTCAGAGCAGATATGATTGATTTGAAAACTCTAGATATGCAGCTAGAGAAGCACTTGAGCCGTGTCTGGTCAAAGAGCATTGAGAATCAAAGGCCTAAGGATGTGTGGGAGATTGATTTGTCTAAACTTGAGATCATAAGGCTAGTTGCTCAAGGGACTTATGGAACAGTATACCGGGGTACATATGACAATCAAGATGTTGCAGTGAAGGTATTGGACTGGGGGGAGGAGGGTCTAGCCACAACGGCTGAAACTGCTGCTTTGCGGGCATCATTTCGGCAAGAGGTTGCTGTTTGGCACAAGCTTGACCATCCTAATGTTACAAAATTTGTTGGAGCTTCAATGGGAGCAACAAATCTTAAAATTCCAATGGATGAACAAAATTCGTTTCCATCTAGGGCCTGTTGCGTTGTTGTTGAGTTTGTTCCTGGTGGGACATTAAAACAATACTTGATTAGATTCTGTAGAAGGAAACTTAGCTTTAGGGAAGTGATTAAATTAGCTTTGGAACTCTCTAGAGGGCTTAGCTATCTACACTCCAAGAAGATTGTGCATCGTGATGTCAAAACTGAAAATATGTTGATGACAAGCGACTACGCTGTCAAAATTGCTGATTTTGGGGTTGCCCGTGTTGAAGCTCAGAATCCAAGAGATATGACTGGGGAAACTGGTACTCTTGGATACATGGCCCCAGAGGTTCTTGAAGGGAAGCCATACAATAGAAGATGTGATGTCTATAGCTTTGGCATCTGCTTGTGGGAAATTTACTGCTGTGATATGCCATACGCCGATCTTAGTTTTGCTGACGTGTCATCTGCAGTTGTTCGACAGAATCTGCGACCCAGTATCCCGAGATGCTGTCCAAGTTCTCTGGCAAATGTGATGAAGAAATGCTGGGATGCGAATCCAGCCAAACGCCCTGAAATGCATGAGGTTGTCAAAATGTTGGAAGCCATTGATACAAGCAGAGGAGGGGGGATGATTTCTCCTGATGACACTAGCTGTTTATGTTTCAGGCCTTTCGGCAAGAAATTTGCCCTCATATTGTCACTACTGCAGTTACCAATCTGTCTTTGTTTCAGCATTTTTCAATGA 1494 43.57 MPCGMGKKEGGILAHPSVGYVHTVKSPRFSLHRSQNSVVLRFPLLVASFLENLVFDFSLPCNSLFFHNHFPVLVCGSDYAERSRIPCIRGVLFELSVLILAMNSKGNDMGGSPVPKETQSLAGMRSISSKDMIFRADMIDLKTLDMQLEKHLSRVWSKSIENQRPKDVWEIDLSKLEIIRLVAQGTYGTVYRGTYDNQDVAVKVLDWGEEGLATTAETAALRASFRQEVAVWHKLDHPNVTKFVGASMGATNLKIPMDEQNSFPSRACCVVVEFVPGGTLKQYLIRFCRRKLSFREVIKLALELSRGLSYLHSKKIVHRDVKTENMLMTSDYAVKIADFGVARVEAQNPRDMTGETGTLGYMAPEVLEGKPYNRRCDVYSFGICLWEIYCCDMPYADLSFADVSSAVVRQNLRPSIPRCCPSSLANVMKKCWDANPAKRPEMHEVVKMLEAIDTSRGGGMISPDDTSCLCFRPFGKKFALILSLLQLPICLCFSIFQ 497
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4749219 4754677 + CcPI632755_05g005800.1 Cco05g0580 178208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0580 497 FunFam Kinase suppressor of Ras 1 165 259 - -
Cco05g0580 497 Pfam Protein tyrosine and serine/threonine kinase 177 449 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco05g0580 497 ProSiteProfiles Protein kinase domain profile. 176 452 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco05g0580 497 CDD STKc_MAP3K-like 182 449 - -
Cco05g0580 497 SMART serkin_6 176 452 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco05g0580 497 PRINTS Tyrosine kinase catalytic domain signature 272 285 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco05g0580 497 PRINTS Tyrosine kinase catalytic domain signature 420 442 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco05g0580 497 PRINTS Tyrosine kinase catalytic domain signature 310 328 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco05g0580 497 PRINTS Tyrosine kinase catalytic domain signature 376 398 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco05g0580 497 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 136 450 IPR051681 GO:0004674(PANTHER)|GO:0005886(PANTHER)
Cco05g0580 497 SUPERFAMILY Protein kinase-like (PK-like) 156 449 IPR011009 -
Cco05g0580 497 ProSitePatterns Serine/Threonine protein kinases active-site signature. 316 328 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco05g0580 497 Gene3D Phosphorylase Kinase; domain 1 166 259 - -
Cco05g0580 497 Gene3D Transferase(Phosphotransferase) domain 1 275 460 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0580 Cco-Chr5:4749219 Cco10g1412 Cco-Chr10:27205296 5.80E-138 dispersed
Cco05g0580 Cco-Chr5:4749219 Cco09g0698 Cco-Chr9:6247296 1.10E-157 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86825 PF07714 PK_Tyr_Ser-Thr 2.40E-60 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0580 - - - 0.0