Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco05g0580 | ATGCCCTGTGGTATGGGTAAAAAAGAAGGAGGAATCTTGGCTCATCCATCCGTTGGATACGTGCATACAGTGAAATCCCCGCGCTTTTCTCTTCATCGTTCCCAAAATTCTGTGGTGCTACGATTCCCATTGCTGGTGGCTTCTTTTTTAGAAAATTTGGTTTTCGATTTTTCGTTGCCTTGCAATTCTCTGTTCTTCCATAACCATTTTCCTGTCCTGGTCTGCGGGTCCGATTATGCTGAGAGGTCTAGAATTCCTTGTATTCGAGGTGTACTATTTGAGTTATCTGTGTTGATCTTAGCAATGAATTCGAAAGGCAATGATATGGGGGGTTCTCCGGTCCCAAAGGAGACACAGAGCCTGGCTGGTATGAGAAGCATTAGCAGCAAAGATATGATATTCAGAGCAGATATGATTGATTTGAAAACTCTAGATATGCAGCTAGAGAAGCACTTGAGCCGTGTCTGGTCAAAGAGCATTGAGAATCAAAGGCCTAAGGATGTGTGGGAGATTGATTTGTCTAAACTTGAGATCATAAGGCTAGTTGCTCAAGGGACTTATGGAACAGTATACCGGGGTACATATGACAATCAAGATGTTGCAGTGAAGGTATTGGACTGGGGGGAGGAGGGTCTAGCCACAACGGCTGAAACTGCTGCTTTGCGGGCATCATTTCGGCAAGAGGTTGCTGTTTGGCACAAGCTTGACCATCCTAATGTTACAAAATTTGTTGGAGCTTCAATGGGAGCAACAAATCTTAAAATTCCAATGGATGAACAAAATTCGTTTCCATCTAGGGCCTGTTGCGTTGTTGTTGAGTTTGTTCCTGGTGGGACATTAAAACAATACTTGATTAGATTCTGTAGAAGGAAACTTAGCTTTAGGGAAGTGATTAAATTAGCTTTGGAACTCTCTAGAGGGCTTAGCTATCTACACTCCAAGAAGATTGTGCATCGTGATGTCAAAACTGAAAATATGTTGATGACAAGCGACTACGCTGTCAAAATTGCTGATTTTGGGGTTGCCCGTGTTGAAGCTCAGAATCCAAGAGATATGACTGGGGAAACTGGTACTCTTGGATACATGGCCCCAGAGGTTCTTGAAGGGAAGCCATACAATAGAAGATGTGATGTCTATAGCTTTGGCATCTGCTTGTGGGAAATTTACTGCTGTGATATGCCATACGCCGATCTTAGTTTTGCTGACGTGTCATCTGCAGTTGTTCGACAGAATCTGCGACCCAGTATCCCGAGATGCTGTCCAAGTTCTCTGGCAAATGTGATGAAGAAATGCTGGGATGCGAATCCAGCCAAACGCCCTGAAATGCATGAGGTTGTCAAAATGTTGGAAGCCATTGATACAAGCAGAGGAGGGGGGATGATTTCTCCTGATGACACTAGCTGTTTATGTTTCAGGCCTTTCGGCAAGAAATTTGCCCTCATATTGTCACTACTGCAGTTACCAATCTGTCTTTGTTTCAGCATTTTTCAATGA | 1494 | 43.57 | MPCGMGKKEGGILAHPSVGYVHTVKSPRFSLHRSQNSVVLRFPLLVASFLENLVFDFSLPCNSLFFHNHFPVLVCGSDYAERSRIPCIRGVLFELSVLILAMNSKGNDMGGSPVPKETQSLAGMRSISSKDMIFRADMIDLKTLDMQLEKHLSRVWSKSIENQRPKDVWEIDLSKLEIIRLVAQGTYGTVYRGTYDNQDVAVKVLDWGEEGLATTAETAALRASFRQEVAVWHKLDHPNVTKFVGASMGATNLKIPMDEQNSFPSRACCVVVEFVPGGTLKQYLIRFCRRKLSFREVIKLALELSRGLSYLHSKKIVHRDVKTENMLMTSDYAVKIADFGVARVEAQNPRDMTGETGTLGYMAPEVLEGKPYNRRCDVYSFGICLWEIYCCDMPYADLSFADVSSAVVRQNLRPSIPRCCPSSLANVMKKCWDANPAKRPEMHEVVKMLEAIDTSRGGGMISPDDTSCLCFRPFGKKFALILSLLQLPICLCFSIFQ | 497 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 4749219 | 4754677 | + | CcPI632755_05g005800.1 | Cco05g0580 | 178208 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco05g0580 | 497 | FunFam | Kinase suppressor of Ras 1 | 165 | 259 | - | - | |
Cco05g0580 | 497 | Pfam | Protein tyrosine and serine/threonine kinase | 177 | 449 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco05g0580 | 497 | ProSiteProfiles | Protein kinase domain profile. | 176 | 452 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco05g0580 | 497 | CDD | STKc_MAP3K-like | 182 | 449 | - | - | |
Cco05g0580 | 497 | SMART | serkin_6 | 176 | 452 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco05g0580 | 497 | PRINTS | Tyrosine kinase catalytic domain signature | 272 | 285 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco05g0580 | 497 | PRINTS | Tyrosine kinase catalytic domain signature | 420 | 442 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco05g0580 | 497 | PRINTS | Tyrosine kinase catalytic domain signature | 310 | 328 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco05g0580 | 497 | PRINTS | Tyrosine kinase catalytic domain signature | 376 | 398 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco05g0580 | 497 | PANTHER | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED | 136 | 450 | IPR051681 | GO:0004674(PANTHER)|GO:0005886(PANTHER) | |
Cco05g0580 | 497 | SUPERFAMILY | Protein kinase-like (PK-like) | 156 | 449 | IPR011009 | - | |
Cco05g0580 | 497 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 316 | 328 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco05g0580 | 497 | Gene3D | Phosphorylase Kinase; domain 1 | 166 | 259 | - | - | |
Cco05g0580 | 497 | Gene3D | Transferase(Phosphotransferase) domain 1 | 275 | 460 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco05g0580 | Cco-Chr5:4749219 | Cco10g1412 | Cco-Chr10:27205296 | 5.80E-138 | dispersed | |
Cco05g0580 | Cco-Chr5:4749219 | Cco09g0698 | Cco-Chr9:6247296 | 1.10E-157 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
86825 | PF07714 | PK_Tyr_Ser-Thr | 2.40E-60 | CL0016 | Cco | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco05g0580 | - | - | - | 0.0 |