Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0583 ATGGCATTACAATCACAAATTCGCATCATTTTTTCCTTGCGGAGCTCGATTCGTATCTCTTACTCAGCCAAACCTCTCTGCACCATTACTGGATCGACCCAGGTCTCCGAATCCCCCGACCTTCCGGACTGGGTAAAGTTCTTCGATACTAAAAGCTCTTCACATTCAGAATCTGAAGACGATGTCTTTGCTATTCCTCCATTGGTGCATTGGCTCGAATCTCAAAGGCTTCAAGACAACAGTAAAGTTATCAAGCACAAACTCGGTGAGACGAGCGATAACGAAGTGGACAAAATAAGCATGATGCTAAAGAATCGATACCCATCACCGGAAAACGTTGCAGAAGCTTTGAATGGAAAGGCTTACAGAGTTTCCAACACTTTGGTTGCACAGCTGCTGAAGAGATTTGGGAATGCTTGGATCCCAGCTTATGGGATTTTCAAGTGGGCGAAAGATCAAACACCTTATCGGCATTCGCCTGAATCTTACAACTCCATGGTTGATATCTTGGGTAAGGCTAAAAAGTTTAGACTGATGTGGGAGTTAGTGGATGAGATGAATCATTTATCTGGGTATGTGAGTTTGGAGACGATGAGTAAGGTTATAAGGAGGCTTGCGAGGGCTGGTAGGTATCAGGAGGCAATTGAGGCATTCCGGAAGATAGAGAAATATGGGATTAGTACAGACACAGCAGCCATGAATGTGCTGATGGATGCATTAGTCAAGGAGGGCAGTGTTGAAGAAGCTCGCAATGTGTTTGAAGAATTCAAGGGTTCGATACCTTTCAATTTGACCTCTTTCAATGTTCTAATACATGGTTACTGCAAAGCTAGGAAGCTAAATGAGGCATGGAAGATTATGGAGGAACTCGAGAAAAATAGACTTGAACCTGATGTGATTTCCTACACTGCTTTCATTGAAGCTCATTGCCGCGACAAGGACTTCCGGAAAGTGGATAAGATTCTGATGCAAATGGAACAAAAGGGGTGCAGGCCTAATGCAGTAACTTTCACCATTATAATGCATGCTCTAGGGAAGGCAAAACAGATTAATGAAGCTCTAAAAGTATATGAGAAGATGAAGAAAGAGGGTTGTGTGCCTGATAGTCCATTCTATAGCTCCCTGATATTCATTCTTGGTAAAGCTGGTAGGCTCACAGATGTTCAGGAGATAGTAGAGGACATGACAAAGCAGGGGGTCAATCCAGATGTGTTGACATATAACACGATGATATCTTGTGCTTGTGCGCATTCACAAGAAGAGATAGCACTAAGATGGCTACGGAAAATGGAGGAGGTTTCGTGCAAGCCAGACCTCGAGACTTACCACCCTTTATTGAAGATGTTCTGTAAAAAGAAGAGAATGAAGGTGCTGCAGTTTTTGTTAGATCATATGTTCAAGAATGATGTAAGTATTGAAGCTGGGACTTACTCGATTATGGTGCGTGGGATGTGCAAGAACGGGAAACTCCATCTTGCTTGCTCGTTCTTTGGGGAAATGGTGTCGAAGGGGATGGTTCCTAAAGACTCCACATTCACGATGTTGAAGGAAGAGCTTGAGAGGAAAAGTATGTTAGAAGAAATGAAAATCATTGAGAAGTTGATGTCCTATGCAACAGCTCAAGATACGAGTTAA 1635 42.94 MALQSQIRIIFSLRSSIRISYSAKPLCTITGSTQVSESPDLPDWVKFFDTKSSSHSESEDDVFAIPPLVHWLESQRLQDNSKVIKHKLGETSDNEVDKISMMLKNRYPSPENVAEALNGKAYRVSNTLVAQLLKRFGNAWIPAYGIFKWAKDQTPYRHSPESYNSMVDILGKAKKFRLMWELVDEMNHLSGYVSLETMSKVIRRLARAGRYQEAIEAFRKIEKYGISTDTAAMNVLMDALVKEGSVEEARNVFEEFKGSIPFNLTSFNVLIHGYCKARKLNEAWKIMEELEKNRLEPDVISYTAFIEAHCRDKDFRKVDKILMQMEQKGCRPNAVTFTIIMHALGKAKQINEALKVYEKMKKEGCVPDSPFYSSLIFILGKAGRLTDVQEIVEDMTKQGVNPDVLTYNTMISCACAHSQEEIALRWLRKMEEVSCKPDLETYHPLLKMFCKKKRMKVLQFLLDHMFKNDVSIEAGTYSIMVRGMCKNGKLHLACSFFGEMVSKGMVPKDSTFTMLKEELERKSMLEEMKIIEKLMSYATAQDTS 544
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4761418 4763052 + CcPI632755_05g005830.1 Cco05g0583 178211

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0583 544 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 194 228 IPR002885 -
Cco05g0583 544 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 473 507 IPR002885 -
Cco05g0583 544 SUPERFAMILY TPR-like 140 363 IPR011990 GO:0005515(InterPro)
Cco05g0583 544 Pfam PPR repeat family 265 311 IPR002885 -
Cco05g0583 544 NCBIfam pentatricopeptide repeat 234 257 IPR002885 -
Cco05g0583 544 NCBIfam pentatricopeptide repeat 406 438 IPR002885 -
Cco05g0583 544 NCBIfam pentatricopeptide repeat 199 229 IPR002885 -
Cco05g0583 544 NCBIfam pentatricopeptide repeat 335 369 IPR002885 -
Cco05g0583 544 NCBIfam pentatricopeptide repeat 266 299 IPR002885 -
Cco05g0583 544 NCBIfam pentatricopeptide repeat 162 188 IPR002885 -
Cco05g0583 544 NCBIfam pentatricopeptide repeat 300 334 IPR002885 -
Cco05g0583 544 NCBIfam pentatricopeptide repeat 476 507 IPR002885 -
Cco05g0583 544 Pfam Pentacotripeptide-repeat region of PRORP 346 517 IPR033443 -
Cco05g0583 544 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 263 297 IPR002885 -
Cco05g0583 544 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 403 437 IPR002885 -
Cco05g0583 544 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 298 332 IPR002885 -
Cco05g0583 544 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 333 367 IPR002885 -
Cco05g0583 544 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 229 259 IPR002885 -
Cco05g0583 544 Gene3D Tetratricopeptide repeat domain 259 397 IPR011990 GO:0005515(InterPro)
Cco05g0583 544 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 368 402 IPR002885 -
Cco05g0583 544 Gene3D Tetratricopeptide repeat domain 95 258 IPR011990 GO:0005515(InterPro)
Cco05g0583 544 Gene3D Tetratricopeptide repeat domain 419 542 IPR011990 GO:0005515(InterPro)
Cco05g0583 544 Pfam PPR repeat 162 186 IPR002885 -
Cco05g0583 544 Pfam PPR repeat 233 257 IPR002885 -
Cco05g0583 544 Pfam PPR repeat 199 226 IPR002885 -
Cco05g0583 544 PANTHER PPR_LONG DOMAIN-CONTAINING PROTEIN 114 415 - GO:0009507(PANTHER)|GO:0010019(PANTHER)|GO:0031930(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0583 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0583 Cco-Chr5:4761418 Cco09g0302 Cco-Chr9:2640502 9.80E-14 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g533 . . . . . . . . . . . Cma14g01729 . Car14g01560 Sed08g1848 . . Bhi01g00782 Tan10g0806 Cmetu03g1308 . Hepe05g1573 . . . . . . . . . . . . . . . . . . . Bda11g00588 . . . . . . . Cmo14g01768 . . . . . . . . . . . . . Cla05g00522 Cam05g0575 Cec05g0585 Cco05g0583 Clacu05g0571 Cmu05g0541 Cre05g0610 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014430 1 1 0 0 0 1 1 1 1 1 1 1 1 0 1 1 1 0 0 1 1 1 1 1 0 0 1 1 1 0 21