Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0610 ATGGCTGATGTTTCCTCTGCTAATTTGGTTAACAATGGTAATGAACTTATTGAGAAGGCCCATTCCTTAAATGGGTATCGAAAAAGCTGTTGGTATGAGGAAGAAATTGAAGAGAATTTAAGATGGTCATTTGCTCTTAATAGCATACTGCATACTGGAGCTTCTCAGTATCAAGACATTGCGTTACTCGACACGAAGCCATTCGGGAAGGCGTTGGTCATTGATGGAAAGCTTCAAAGTGCAGAAACTGATGAATTCATATACCATGAATGCCTTGTTCACCCTGCACTTCTCCATCATCCCAATCCAAAGACCATCTTTATCATGGGAGGAGGTGAAGGCTCCACAGCAAGAGAGCTACTTAGACACAAGACTGTGGAGAAAGTAGTAATGTGCGACATCGATGAGGAAGTTGTTGATTTCTGCAAGTCATACCTGATAGTAAACAAAGAAGCTTTCTGTGATCCAAGACTTGAACTTATCATTAACGATGCCAGAGTGGAGCTCGAGAACCGAACTGAGCTATACGACGTGATAGTGGGCGATCTTGCAGACCCAATTGAGGGTGGTCCTTGTTATAAACTCTATACCAAATCTTTCTATGAGTATACTGTGAAGCCTAGATTGAAACAAGATGGTATTTTTATCACTCAGGCTGGTCCAGCTGGAATTTTCAGCCATACTGAAGTGTTTTCTTGCATCTACAATACTCTAAAACAAGTCTTTAAATATGTGGTGCCTTATTCTGCCCATATTCCTTCATTTGCTGATACTTGGGGTTGGGTTATGGCCTCAGATACCCCTTTTGTTTTGAATGCTGATGATTTGGACCAAAGAATCAAACAAAGAATCACAGGGGAAAACAAGTACTTTGATGGAAAAACATTCTCATCTGCCTCTACATTAAGCAAAGCAGTTCGGAAGTCACTCGACAACGAGACGCATGTGTACACGGAAGGAACGGCGAGGTTCATATATGGATATGGAGCTGCAGCTTGCAAGCCCAACCAAGTTTGA 1017 41.79 MADVSSANLVNNGNELIEKAHSLNGYRKSCWYEEEIEENLRWSFALNSILHTGASQYQDIALLDTKPFGKALVIDGKLQSAETDEFIYHECLVHPALLHHPNPKTIFIMGGGEGSTARELLRHKTVEKVVMCDIDEEVVDFCKSYLIVNKEAFCDPRLELIINDARVELENRTELYDVIVGDLADPIEGGPCYKLYTKSFYEYTVKPRLKQDGIFITQAGPAGIFSHTEVFSCIYNTLKQVFKYVVPYSAHIPSFADTWGWVMASDTPFVLNADDLDQRIKQRITGENKYFDGKTFSSASTLSKAVRKSLDNETHVYTEGTARFIYGYGAAACKPNQV 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4956975 4959508 + CcPI632755_05g006100.1 Cco05g0610 178238

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0610 338 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 29 311 IPR029063 -
Cco05g0610 338 Gene3D Spermidine synthase, tetramerisation domain 29 81 IPR037163 -
Cco05g0610 338 Gene3D Vaccinia Virus protein VP39 82 334 IPR029063 -
Cco05g0610 338 CDD AdoMet_MTases 110 218 - -
Cco05g0610 338 PANTHER THERMOSPERMINE SYNTHASE ACAULIS5 21 327 - GO:0006596(PANTHER)|GO:0010487(PANTHER)
Cco05g0610 338 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 29 266 IPR030374 -
Cco05g0610 338 Pfam Spermine/spermidine synthase domain 85 264 - -
Cco05g0610 338 NCBIfam fused MFS/spermidine synthase 101 246 - -
Cco05g0610 338 Hamap Polyamine aminopropyltransferase [speE]. 30 311 IPR001045 GO:0003824(InterPro)
Cco05g0610 338 FunFam Polyamine aminopropyltransferase 82 329 - -
Cco05g0610 338 FunFam thermospermine synthase ACAULIS5 29 81 - -
Cco05g0610 338 Pfam Spermidine synthase tetramerisation domain 31 82 IPR035246 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0610 K18787 - - csv:101221818 675.241
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0610 Cco-Chr5:4956975 Cco08g1138 Cco-Chr8:23235252 7.00E-127 dispersed
Cco05g0610 Cco-Chr5:4956975 Cco01g0050 Cco-Chr1:376142 4.20E-31 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g479 . . . . . Bpe14g01182 . . . . Cma06g01416 . Car06g01221 . Sed02g1246 Cpe08g00255 . Bhi01g00823 Tan10g0855 Cmetu06g2393 . Hepe05g1540 . Lcy11g1531 . . . . . . . . . . Cone4ag0236 Lsi05g01427 . . Cme06g00617 Blo02g00544 . . Bda13g00130 . . . . . Cmo06g01418 . . . . . . . . . . . . . . Cla05g00553 Cam05g0603 Cec05g0612 Cco05g0610 Clacu05g0599 Cmu05g0569 Cre05g0638 . Csa03g01341 Chy06g00587 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002288 2 3 1 1 2 2 2 2 2 2 1 2 2 2 2 2 2 4 2 2 2 2 2 2 2 1 2 6 2 2 63