Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0632 ATGATGATGAATTCCACGAGGAAGTGTGATGTGGCAAAAGTCAACAATTCCACGTCGGGAGGGGTTTTGACTCAGCTAGGGATGGCGGCGAAGAGAACCGATGAAGGAAACGGCGAAGTTGAATGCGGCGAGGTCCGGCTTGGTGGTGATCGGAGCTCTGGCCTTCGGATACCTGAGCTTACAGTTCGTGTTCAAGCCCTACCTCGAGAAAGTCTGGTAGTTAGTAATATGCTGGCTGTCATTCTTTCATTGGTTAGCCTTGCCCTTCTGTATAGGTACTCAAGGTGGTTTCTTCGTATTATGCCAGCTGTCATTCCTTCATTGAGTTGGTCGTCTTGGGGCGGTGTGACTGGGGGAATAGCACCTATCAGGTTGAAACCAGAATTTCCTCCGGCAGTCCAGAGTCGGTGCTGTAAAGCTTTCAAATGGCGGGCTCTGTTGTCCAATCTAGTCGATCGAGGGACCTCGATAAGCTCCTTCTTAGGCCCGGTAACCTCATCGGCGCCAATTTCGAGCCCGGTTCCCAAGTGGTTGAGGGATGACCTTCAACAGTATGTGAAAGTGTTGGTCATAGGAGCTGGGGGGTTGGGCTGCGAGCTCCTGAAGGACTTGGCTTTGTCGGGTTTCCGGAATTTGGAAGTCATTGACATGGATCGCATCGAAGTTACTAATCTCAATCGTCAGTTTCTCTTCAGGCTTGAAGATGTTGGTAAGCCAAAAGCTGAGGTGGCTGCAAAACGTGTTATGGAGAGAGTTAGTGGTGTCAATATTCTGCCGCATTTTTGCCGGATTGAGGATAAAGAAATTGAATTTTACAACGATTTTCACATAATTGCACTTGGTCTTGATTCCATTGAAGCTCGAAGTTACATCAATTCCGTCGCTTGTAGCTTCCTTGAGTATGATTCTGATGATAATCCATTAGAAGAAACTATTAAACCAATGGTAGATGGTGGAACAGAAGGCTTCAAGGGGCATGCGAGGGTAATTTTACCAGGGGTCACACCATGCTTCGAGTGTACCATCTGGCTTTTTCCACCTCAAGTAAAGTTTCCATTATGTACCCTAGCAGAAACTCCTAGAACTGCTGCTCATTGTATCGAGTATGCCCATCTAATTAAATGGGATGAGGTTCATAGTGGAAAAGCTTTTGATCCAGATGATTCTGAACATATGAAATGGGTTTACAGTGAGGCTGTTAAGAGAGCTGAGCTTTTTGGCATTCCGGGAGTTACATATTCACTAACTCAGGGTGTTGTTAAGAATATCATACCTGCTATTGCTTCCACCAATGCAATTATATCAGCTGCATGTGCACTGGAAACGTTGAAGATTGTATCAGGATGCAGCAAAACTCTATCCAACTACTTAACATATAATGGTGCAGAAGGTCTTCACACTAAGGTGACCGAGTTTGTAAAAGATAAGGACTGTCTTGTTTGTGGTCCAGGCGTTCTTATTGAGCTGGATTCTTCAATTACTTTACAAAAGTTCATTGACCTGTTAGAAGATCATCCGAAGCTCTTGTTATCAAAGGCAAGTGTCACGCATCGTGGGAAGAATCTGTACATGCAGGCACCTCCTGTACTTGAAGAGATGACCAGATCAAATTTGGGTGTTCCACTTTTTGACTTGATGGGTAAAGTTTTGAAAGACGTAGTCCATGTGACTGGTGTAGCTTCTAAGAATGATAAGAAAACTTCCTGTCTTCGAAAACTACGTGTGGCTTTTAAGGGGGTTGACGGTGTTACGGATATGGATACTGCAAGATATGATCTTGGAGAAACCAAGAGATTTACTGATGCTGAACATTTAATGCTATAG 1824 44.57 MMMNSTRKCDVAKVNNSTSGGVLTQLGMAAKRTDEGNGEVECGEVRLGGDRSSGLRIPELTVRVQALPRESLVVSNMLAVILSLVSLALLYRYSRWFLRIMPAVIPSLSWSSWGGVTGGIAPIRLKPEFPPAVQSRCCKAFKWRALLSNLVDRGTSISSFLGPVTSSAPISSPVPKWLRDDLQQYVKVLVIGAGGLGCELLKDLALSGFRNLEVIDMDRIEVTNLNRQFLFRLEDVGKPKAEVAAKRVMERVSGVNILPHFCRIEDKEIEFYNDFHIIALGLDSIEARSYINSVACSFLEYDSDDNPLEETIKPMVDGGTEGFKGHARVILPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKAFDPDDSEHMKWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIVSGCSKTLSNYLTYNGAEGLHTKVTEFVKDKDCLVCGPGVLIELDSSITLQKFIDLLEDHPKLLLSKASVTHRGKNLYMQAPPVLEEMTRSNLGVPLFDLMGKVLKDVVHVTGVASKNDKKTSCLRKLRVAFKGVDGVTDMDTARYDLGETKRFTDAEHLML 607
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5139520 5148724 - CcPI632755_05g006320.1 Cco05g0632 178260

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0632 607 FunFam NEDD8-activating enzyme E1 catalytic subunit 185 373 - -
Cco05g0632 607 SUPERFAMILY Activating enzymes of the ubiquitin-like proteins 181 549 IPR035985 GO:0008641(InterPro)
Cco05g0632 607 Gene3D - 486 572 - -
Cco05g0632 607 ProSitePatterns Ubiquitin-activating enzyme active site. 352 360 IPR033127 -
Cco05g0632 607 CDD Uba3_RUB 187 482 IPR030468 -
Cco05g0632 607 FunFam NEDD8-activating enzyme E1 catalytic subunit 486 568 - -
Cco05g0632 607 Pfam ThiF family 181 479 IPR000594 -
Cco05g0632 607 Pfam E2 binding domain 488 576 IPR014929 GO:0019781(InterPro)|GO:0045116(InterPro)
Cco05g0632 607 FunFam NEDD8-activating enzyme E1 catalytic subunit 351 423 - -
Cco05g0632 607 Gene3D - 184 485 - -
Cco05g0632 607 Gene3D Ubiquitin activating enzymes (Uba3). Chain: B, domain 2 354 422 IPR023318 -
Cco05g0632 607 SMART E2_bind_2 487 578 IPR014929 GO:0019781(InterPro)|GO:0045116(InterPro)
Cco05g0632 607 PANTHER UBIQUITIN-ACTIVATING ENZYME E1 184 551 IPR045886 GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0019781(PANTHER)|GO:0032446(PANTHER)|GO:0045116(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0632 K10686 - - csv:101209336 815.453
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0632 Cco-Chr5:5139520 Cco11g0422 Cco-Chr11:4362298 3.90E-35 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g445 . . . . . Bpe14g01316 . . . . . Cma14g01683 . Car14g01517 Sed02g1264 . Cpe03g01420 Bhi01g00848 Tan10g0877 Cmetu06g2420 . Hepe05g1528 . Lcy11g1514 . . . . . . . Cone14ag0828 . . . Lsi05g01447 . . Cme06g00634 . . . . . . Bma02g00690 . . Cmo06g01432 Cmo14g01729 . . . . . . . . . . . . . Cla05g00570 Cam05g0626 Cec05g0637 Cco05g0632 Clacu05g0622 Cmu05g0590 Cre05g0659 . Csa03g01360 Chy06g00604 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008479 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 4 3 1 35