Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0638 ATGGCTCATATTGCTGTGGAAAGAAATAGGAGAAGGCAAATGAATGAACATCTTAGGGTTTTGAGATCTTTGACTCCTTGTTTCTATATCAAAAGGGGAGATCAAGCCTCGATTATCGGGGGAGTCATAGAGTTTATCAAGGAGTTGCATCAAGTTTTACAATCTTTGGAGTCCAACAAACGGAGGAGGAAGAGTATAAGCCCTAGCCCAGGTCCGAGCCCGAGGCTGCAATCAATGGCGGGATCCGATAATGGCTCGCTTGGATTTGAAAATGGAGTTGATGTCGTCGGAGCGTGTTGCAATTCATCGGTTGCAGATGTCGAAGCGAAGATTTCGGGTTCAAACGTGGTTTTGAAAGTCATTTCCCGACGGATTCCTGGTCAACTTTCGAAGATGATTGGTGTCTTCGAGAGGCTCTCCTTTGAGGTTCTTCATCTCAACATTAGTAGTATGGATGACACGGTTCTGTACTCTTTTGTTGTGAAGATAGGGCTTGAATGTCAACTAAGTTTGGAGGAACTAGCTTATGAAGTTCAACAAAGCTTCTGCTCTCAAGTGTATTTATGCCAATGA 573 43.8 MAHIAVERNRRRQMNEHLRVLRSLTPCFYIKRGDQASIIGGVIEFIKELHQVLQSLESNKRRRKSISPSPGPSPRLQSMAGSDNGSLGFENGVDVVGACCNSSVADVEAKISGSNVVLKVISRRIPGQLSKMIGVFERLSFEVLHLNISSMDDTVLYSFVVKIGLECQLSLEELAYEVQQSFCSQVYLCQ 190
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5194208 5195846 + CcPI632755_05g006380.1 Cco05g0638 178266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0638 190 PANTHER TRANSCRIPTION FACTOR FAMA 1 182 IPR044283 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010052(InterPro)|GO:0010374(PANTHER)|GO:0045893(PANTHER)
Cco05g0638 190 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 49 IPR011598 GO:0046983(InterPro)
Cco05g0638 190 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 1 62 IPR036638 GO:0046983(InterPro)
Cco05g0638 190 SMART finulus 4 55 IPR011598 GO:0046983(InterPro)
Cco05g0638 190 CDD bHLH_AtFAMA_like 1 64 - -
Cco05g0638 190 Gene3D - 1 66 IPR036638 GO:0046983(InterPro)
Cco05g0638 190 MobiDBLite consensus disorder prediction 60 81 - -
Cco05g0638 190 FunFam Transcription factor MUTE 1 67 - -
Cco05g0638 190 Pfam Helix-loop-helix DNA-binding domain 1 50 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0386 Cco-Chr5:3149754 Cco05g0638 Cco-Chr5:5194208 2.40E-39 dispersed
Cco05g0638 Cco-Chr5:5194208 Cco05g1037 Cco-Chr5:9146598 2.10E-40 dispersed
Cco05g0638 Cco-Chr5:5194208 Cco08g1287 Cco-Chr8:24643432 3.20E-28 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59236 PF00010 HLH 1.00E-07 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0638 - - - 0.0