Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0640 ATGGGTATTTCATGGAGTAACAGAAGAAGAAACAATTATCTTCAAAACCCACCCCCGCCTCCTCCTCCTCCCTACCTTTCTTCTTCCTCTTTCTATTACCCCTCTGAACCTCAATCTCTTTCTCCTACTCCACCTCCGCCGCTGCAGACCCATCAATTCACCAATTCCCACCCTCCTCCCCCGCACAGCCACCCTTACGGTCCAACTTCTCAGCCACCACCTCTGCCGCCGATTCCTCATCCCCCTGCCCCTGCCCCCGCTCCTCACCCTTATTACTTCTCCGGTGGGTACAATTCGTGTAATTATGGGAATTCTTCGATGGGGCGTTTCAATTTTCACCCTTATTATGCTAATCAGAGTAATGGGTGGTCCCAAATTCGGCCGGCCATGGGTCCGCCGTTGCTTCCGCCACCGTCTTTGCCGTTTGTGGAGCATCGGCAAGCAAAGAAGGTTAGAAATGATGTGAATGTACATAAGGATACTTTAAGGATTGAGGTGGACGAGCAGAACCCTGATCATCATTTGGTTTCTTTCGTTTTCGATGCCTTGTATGATGGAAGCGTAACCATTCTATTTTTTGCCAAGGAGGAACCCAACTGTAGGTTTGTTCCAGTATATCCTGATGCCTTTAAGCCAGTCAAAATCCCATTTCAGAAGGGTCCTGCTCAGAAATTCTTTCAGCCTGTGGGAACTGGCTTTGACTTAGGGTTTTTCGAGTTGGAGGACCTCTCAAAACCATCACCTGGAGAAGACATTTTCCCTCTTGTTATATCAGCTGAGACTTGTTCACCCTCTCAATCTGATGAAGAACAAATTGGTGAGCCTCAACGAGATAATTCACACATGCAAATCACTCAAGCTGTTTTGGAGAAGAAAAATGGTGGTCTTTTCCAGGTTAGAGTGATTAGGCAACTACTATGGATCGATGGAGTGAGATATGAGTTGCGTGAAATATTTGGAATAGGGAGTTCATCAGCAGAAGGTTTTGACGATAATGACACCGGGAAGGAGTGTGTGATTTGCATGACTGAACCCAAGGATACCGCTGTATTACCATGCCGACATTTGTGCATGTGCAGTGATTGTGCCAAGGAACTGAGGCTTCAATCTAATAAATGTCCTATCTGTCGTCAACCGATTGAAGAACTTATAGAAATCAAGATAAATAATAGCGACCAGTGA 1182 46.11 MGISWSNRRRNNYLQNPPPPPPPPYLSSSSFYYPSEPQSLSPTPPPPLQTHQFTNSHPPPPHSHPYGPTSQPPPLPPIPHPPAPAPAPHPYYFSGGYNSCNYGNSSMGRFNFHPYYANQSNGWSQIRPAMGPPLLPPPSLPFVEHRQAKKVRNDVNVHKDTLRIEVDEQNPDHHLVSFVFDALYDGSVTILFFAKEEPNCRFVPVYPDAFKPVKIPFQKGPAQKFFQPVGTGFDLGFFELEDLSKPSPGEDIFPLVISAETCSPSQSDEEQIGEPQRDNSHMQITQAVLEKKNGGLFQVRVIRQLLWIDGVRYELREIFGIGSSSAEGFDDNDTGKECVICMTEPKDTAVLPCRHLCMCSDCAKELRLQSNKCPICRQPIEELIEIKINNSDQ 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5221215 5225076 - CcPI632755_05g006400.1 Cco05g0640 178268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0640 393 PANTHER MAHOGUNIN 64 391 IPR045194 GO:0016567(PANTHER)|GO:0061630(PANTHER)|GO:0061630(InterPro)
Cco05g0640 393 FunFam probable E3 ubiquitin-protein ligase LOG2 322 387 - -
Cco05g0640 393 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 323 387 IPR013083 -
Cco05g0640 393 MobiDBLite consensus disorder prediction 38 83 - -
Cco05g0640 393 SMART ring_2 338 376 IPR001841 -
Cco05g0640 393 CDD mRING-HC-C3HC5_MGRN1-like 336 377 IPR045195 -
Cco05g0640 393 ProSiteProfiles Zinc finger RING-type profile. 338 377 IPR001841 -
Cco05g0640 393 SUPERFAMILY RING/U-box 337 383 - -
Cco05g0640 393 MobiDBLite consensus disorder prediction 14 28 - -
Cco05g0640 393 MobiDBLite consensus disorder prediction 1 83 - -
Cco05g0640 393 Pfam Zinc finger, C3HC4 type (RING finger) 336 382 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0640 Cco-Chr5:5221215 Cco10g2019 Cco-Chr10:33678460 8.50E-76 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0640 K27504 - csv:101203938 681.019