Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0657 ATGGGTTGTGTTCTTGGAAAGTGTTGCACTTCCAGTCGTCACCAGCCGTCTTCCGACGGCGATATCACCCAATTTGGTGATGCCCCGCCGTGTAGTTTACATGGAAAACATATACTAACCGGAAGGTCATTGGAGTCTGTTCGTGTGCCTTCTCACAACTACAATTTGGAGTATTCGCTTCTGACCCAGCGCGGCTACTACCCTGATTCCCCTGATAAAGAAAACCAAGATAGTTTCTGTGTTAGTACACAAATTCGAGGTAACCCGAATATCCACATCTTTGGTGTTTTTGATGGTCATGGTCAATTTGGAATGCAGTGTTCGAATTTCGTTAAGGATAGGGTTGTGCAGCTACTGTGTAATGATTCAAAATTGTTGGAAGATCCTGTTAAAGCTTATAATTCGGCATTTTTGACTGCGAATGATGAATTGCATAATAGTGAGATTGATGATTCCATGAGCGGTACAACAGCTATTACTGTTCTTGTTCTTGGGAATACACTTTACGTTGCGAATGTGGGTGATTCGAGGGCGGTAGTGGCTGTTAAAAATGGGAATCGAATTGTGGCTGAGGACATGTCTCATGATCAAACACCATTTAGGAAGGATGAGTGTGAGAGAGTAAAGCTAGCTGGGGCTAGGGTTTTGACCATTGATCAAATTGAGGGGCTTAGAGATCCGGATATTCAAGTATGGGGTGATGAGGAGAGTGAGGGAAATGATCCTCCTCGATTGTGGTTTCCTAATAGTTTGTATCCTGGTACTGCATTTACGCGGAGTGTAGGAGACAGTGCAGCGGAGAAGATTGGTGTCACTGCTGTCCCTGAGGTTTCAGTTGTTCAACTGACTCAAAACCATCTTTTCTTTGTCGTTGCAAGCGATGGAGTTTTCGAGTTCCTTACAAGTCAAGCTGTTGTTGATATGGCTGCAAGGTATGCCGATCCGCGGGATGCATGCTCTGCTATTGCTGGAGAATCATATAAGCTATGGTTGGAGCATGAAAACCGGACAGATGATATAACAATCATCATCGTTCACATCAAAGGCCTCTCTAATTCAGGTGGTACTGGAACTGTTGGGCTGAATGGGGTCCACATAAGGCATTCAAATTCAGAGCGGGGAACCTCCGAGATATCAGCTACCACTGGAAGTTCAGAGGCCTTTCGCTCCTTCAGAAGTGATTTATCAGATCTGCATATCTCTCAGCATGTGGGTTTGATGAACAGGAGTACAGCAATTGTCGTTCCATCTCCTCCGCAGCACCGACCATTAGAAGTGGAAGTGGGCTAA 1290 45.04 MGCVLGKCCTSSRHQPSSDGDITQFGDAPPCSLHGKHILTGRSLESVRVPSHNYNLEYSLLTQRGYYPDSPDKENQDSFCVSTQIRGNPNIHIFGVFDGHGQFGMQCSNFVKDRVVQLLCNDSKLLEDPVKAYNSAFLTANDELHNSEIDDSMSGTTAITVLVLGNTLYVANVGDSRAVVAVKNGNRIVAEDMSHDQTPFRKDECERVKLAGARVLTIDQIEGLRDPDIQVWGDEESEGNDPPRLWFPNSLYPGTAFTRSVGDSAAEKIGVTAVPEVSVVQLTQNHLFFVVASDGVFEFLTSQAVVDMAARYADPRDACSAIAGESYKLWLEHENRTDDITIIIVHIKGLSNSGGTGTVGLNGVHIRHSNSERGTSEISATTGSSEAFRSFRSDLSDLHISQHVGLMNRSTAIVVPSPPQHRPLEVEVG 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5346639 5349672 + CcPI632755_05g006570.1 Cco05g0657 178285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0657 429 ProSiteProfiles PPM-type phosphatase domain profile. 57 347 IPR001932 -
Cco05g0657 429 SUPERFAMILY PP2C-like 45 349 IPR036457 -
Cco05g0657 429 ProSitePatterns PPM-type phosphatase domain signature. 93 101 IPR000222 GO:0043169(InterPro)
Cco05g0657 429 Gene3D - 43 349 IPR036457 -
Cco05g0657 429 Pfam Protein phosphatase 2C 79 322 IPR001932 -
Cco05g0657 429 SMART PP2C_4 49 345 IPR001932 -
Cco05g0657 429 FunFam Phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein 52 349 - -
Cco05g0657 429 CDD PP2Cc 73 347 IPR001932 -
Cco05g0657 429 PANTHER PROTEIN PHOSPHATASE 58 346 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0657 Cco-Chr5:5346639 Cco11g0971 Cco-Chr11:15423598 4.90E-24 dispersed
Cco05g2519 Cco-Chr5:33507876 Cco05g0657 Cco-Chr5:5346639 8.10E-11 transposed
Cco06g0432 Cco-Chr6:4750148 Cco05g0657 Cco-Chr5:5346639 2.70E-15 transposed
Cco05g0657 Cco-Chr5:5346639 Cco06g0574 Cco-Chr6:6181990 5.50E-153 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0657 - - - 0.0