Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0677 ATGCCTTTGAAGAGTATAATTCAGGAAATGAGATCCAGGTCCCGCCGCGTGGTTCAGGATGGATCCACGCCCGAAGTCGGCGACGCTTTGGCGCAGAGCTGTTGGGCTTACATGCCTCAGGAGTTGTTGAGAGAGGTTCTGGTTAGAATCGAGAGCTCTGAGAATGCTTGGCCTCTGCGGAAGACCGTAGTGGCCTGCGCTGGAGTTTGCCGGAGTTGGAGACGAATTACTAAGGAGATTGTTAAAACTCCTGAGGTTTCCGCCAGATTGACGTTTCCTATTTCCGTCAAGCAGCCTGGTCCAAGGGATTTGCTTCTTCATTGCTTCATAAAACGGAATCGATCCGCACAAACTTATTGCCTTTACCTTAGTTTGACTAGTGCACTTGCTGACGATGGAAAGTTTCTTCTTGCGGCCCGTAAGTGTCGACGGGCCACCTGCACTGATTATATAATATCTCTACATGCTGATGACATGTCCAAGGCAAGTGGCACCTTTGTTGGAAAATTAAGATCTAATTTTTTAGGAACAAAGTTCACAATCTTTGATGGACAGCCACCTCATGCAGGAGCCAAGATTTCAAAAAGTCGTTCCTCTAGGCTTGTGGGCCTGAAACAAGTGTCGCCTAGAGTTCCTGCCGGCAACTACCCTGTGGCTCACATCTCATATGAGTTAAATGTCTTGGGTTCAAGGGGTCCAAGGAGAATGCATTGTGTAATGGATGCTATTCCTGCCTCTGCTATTGAGCCAGGAGGGTTGGCTCCAATACAGACTGAATTCTCGCCAAGTCGTACAGACTTTCTTCCATCATTGAGATTTTCCTGGTCAAAATCTAATCACACAGACAATCAACCATCGGGATCTTCAACTGATCAGAAAGATGGAGTTCTAGTGCTTAGGAACAAGGCTCCTCGGTGGCACGAACAGCTCCAATGTTGGTGTTTGAACTTCCATGGGCGAGTGACAATTGCTTCAGTAAAAAACTTTCAGTTAGTAGCTTCACCTGAAAATGGGCTTGCCGGACCTGAACACGAGAAGATCATTCTTCAATTTGGAAAAGTGGGAAAGGATATATTTACAATGGACTACAGATATCCAATCTCAGCGTTTCAAGCTTTTGCCATCTGCCTCAGTAGCTTTGACACAAAGATCGCTTGTGAATGA 1164 46.31 MPLKSIIQEMRSRSRRVVQDGSTPEVGDALAQSCWAYMPQELLREVLVRIESSENAWPLRKTVVACAGVCRSWRRITKEIVKTPEVSARLTFPISVKQPGPRDLLLHCFIKRNRSAQTYCLYLSLTSALADDGKFLLAARKCRRATCTDYIISLHADDMSKASGTFVGKLRSNFLGTKFTIFDGQPPHAGAKISKSRSSRLVGLKQVSPRVPAGNYPVAHISYELNVLGSRGPRRMHCVMDAIPASAIEPGGLAPIQTEFSPSRTDFLPSLRFSWSKSNHTDNQPSGSSTDQKDGVLVLRNKAPRWHEQLQCWCLNFHGRVTIASVKNFQLVASPENGLAGPEHEKIILQFGKVGKDIFTMDYRYPISAFQAFAICLSSFDTKIACE 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5583842 5586726 + CcPI632755_05g006770.1 Cco05g0677 178305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0677 387 CDD F-box_AtTLP-like 35 79 - -
Cco05g0677 387 Gene3D Tubby Protein; Chain A 92 387 IPR025659 -
Cco05g0677 387 ProSitePatterns Tub family signature 2. 372 387 IPR018066 -
Cco05g0677 387 Pfam Tub family 96 382 IPR000007 -
Cco05g0677 387 SUPERFAMILY F-box domain 28 78 IPR036047 GO:0005515(InterPro)
Cco05g0677 387 SUPERFAMILY Tubby C-terminal domain-like 84 387 IPR025659 -
Cco05g0677 387 PRINTS Tubby superfamily signature 344 363 IPR000007 -
Cco05g0677 387 PRINTS Tubby superfamily signature 317 333 IPR000007 -
Cco05g0677 387 PRINTS Tubby superfamily signature 365 387 IPR000007 -
Cco05g0677 387 PRINTS Tubby superfamily signature 166 190 IPR000007 -
Cco05g0677 387 PRINTS Tubby superfamily signature 150 166 IPR000007 -
Cco05g0677 387 PRINTS Tubby superfamily signature 299 316 IPR000007 -
Cco05g0677 387 PRINTS Tubby superfamily signature 215 242 IPR000007 -
Cco05g0677 387 ProSitePatterns Tub family signature 1. 317 330 IPR018066 -
Cco05g0677 387 FunFam Tubby-like F-box protein 92 387 - -
Cco05g0677 387 PANTHER TUBBY-RELATED 25 386 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0677 Cco-Chr5:5583842 Cco08g0837 Cco-Chr8:20209781 4.30E-120 dispersed
Cco07g1101 Cco-Chr7:24564774 Cco05g0677 Cco-Chr5:5583842 1.20E-103 transposed
Cco08g0447 Cco-Chr8:10908332 Cco05g0677 Cco-Chr5:5583842 3.60E-120 transposed
Cco05g0677 Cco-Chr5:5583842 Cco06g0552 Cco-Chr6:5948576 3.30E-165 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59241 PF01167 Tub 1.30E-110 CL0395 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0677 K19600 - csv:101217713 769.229