Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0679 ATGGGGTGTGTTTTTGGGCGAGAGGTATCTGAGAATCCCGTCCAGAAAGAAGAGGAGGAGGAGAGACAGAAGGCGGAGGAGGAAATTAGGGTTTCTGTCAAACCGGAGGTTTCTCAGGTTCAGGCTAATAATGCTCGCAATGGTGGAAGTAGGAAGGAGGTTGAAGATGATAGAGGTTCGAGGCAGAGAAGTGAGCGGCGGCGAAGGCCGAATCCGAGATCGAGTAATCCGCCGAAACATGTGCATGGCGAGCAAGTCGCCGCTGGATGGCCTTCTTGGCTTTCCGCCGTCGCCGGTGAGGCTATCAACGGATGGATTCCTCGCCGTGCTGACTCTTTCGAGAAGCTTGATAAAATTGGGCAAGGGACATATAGTAATGTGTACAAAGCAAGGGACACATTGACAGGGAAGATTGTGGCTCTAAAGAAGGTTCGTTTTGACAATTTGGAGCCTGAGAGTGTGAGATTTATGGCCCGAGAAATTCTCATCCTGCGACGTCTGGATCATCCCAATGTTGTAAAACTCGAAGGTTTAGTGACATCCCGGATGTCTTGTAGTTTATATCTTGTATTTGAATACATGGAGCACGATTTGGCTGGACTTGCTGCGAGCCCCGGGATCAAGTTTACAGAACCACAGGTTAAATGCTACATGCACCAATTGTTATCAGGGCTTGAACACTGTCATAACCGTCATGTGCTGCATCGAGATATAAAGGGATCGAATCTTCTGATTGGTAACGATGGGATCCTTAAGATAGCTGATTTTGGATTGGCTTCTGTCTTTGATCCCAACCACAAGCAGCCAATGACAAGTAGGGTGGTTACTCTATGGTATCGACCTCCTGAACTTCTTCTTGGAGCTACTGATTATGGTGTTGGTGTAGACCTTTGGAGTGCTGGCTGCATTTTAGCTGAGCTGTTAGCCGGAAAGCCTATCATGCCCGGTCGCACGGAGGTTGAGCAGCTGCATAAGATATTTAAGTTATGTGGCTCTCCTACAGACGAATACTGGAAAAAGTCAAGGTTGCCTCATGCAACCATATTCAAGCCTCAACATTCATACAAGAGATGCATAGCAGAGACATTTAAAGACTTCCCACCATCGTCTCTGCCACTAATTGAGACACTTCTTGCAATCGACCCCGCTGAACGCCTGACCGCCACTGCTGCATTACATAGTGAATTTTTCACTACCAAACCATATGCTTGTGAACCTTCCAGCCTCCCTAAGTATCCTCCAAGCAAGGAAATGGATGCAAAACTCCGGGATGAAGAAGCAAGAAGGCTAAGAGCTGCTGGCAGAAGCAATGTAGATGGGGTGAAAAAATCACGGGCACGTGATCGAGCTGTTCGTGCAATTCCTGCTCCAGAAGCCAATGCTGAGCTTCAAGCCAATCTCGATAGGCGACGTCTCATAACACACGCAAATGCAAAGAGCAAGAGTGAAAAGTTTCCTCCTCCACATCAAGATGGAGCACTTGGCTACCCGCTCGGATCTTCGCATCATATTGATCCAATCTACGATCCTCCTGACGTTCCATTTAGCACAATGAATTTCTCGTATCCAAAAGCAAACATTCACACATGGTCAGGTCCTTTGATGGATCCAGCTGCTGTTGGTGCTCCAAGAAGGAAAAAACACACAGCAGGCGACGGGCATTCATCAAAATCATCTAAAGACTTACGAAAAGATAAAAATTCAGTTCGGATCTAA 1716 47.09 MGCVFGREVSENPVQKEEEEERQKAEEEIRVSVKPEVSQVQANNARNGGSRKEVEDDRGSRQRSERRRRPNPRSSNPPKHVHGEQVAAGWPSWLSAVAGEAINGWIPRRADSFEKLDKIGQGTYSNVYKARDTLTGKIVALKKVRFDNLEPESVRFMAREILILRRLDHPNVVKLEGLVTSRMSCSLYLVFEYMEHDLAGLAASPGIKFTEPQVKCYMHQLLSGLEHCHNRHVLHRDIKGSNLLIGNDGILKIADFGLASVFDPNHKQPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPTDEYWKKSRLPHATIFKPQHSYKRCIAETFKDFPPSSLPLIETLLAIDPAERLTATAALHSEFFTTKPYACEPSSLPKYPPSKEMDAKLRDEEARRLRAAGRSNVDGVKKSRARDRAVRAIPAPEANAELQANLDRRRLITHANAKSKSEKFPPPHQDGALGYPLGSSHHIDPIYDPPDVPFSTMNFSYPKANIHTWSGPLMDPAAVGAPRRKKHTAGDGHSSKSSKDLRKDKNSVRI 571
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5590154 5593978 - CcPI632755_05g006790.1 Cco05g0679 178307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0679 571 MobiDBLite consensus disorder prediction 49 72 - -
Cco05g0679 571 ProSitePatterns Protein kinases ATP-binding region signature. 119 142 IPR017441 GO:0005524(InterPro)
Cco05g0679 571 MobiDBLite consensus disorder prediction 532 571 - -
Cco05g0679 571 SMART serkin_6 113 397 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco05g0679 571 MobiDBLite consensus disorder prediction 541 571 - -
Cco05g0679 571 MobiDBLite consensus disorder prediction 11 33 - -
Cco05g0679 571 Pfam Protein kinase domain 113 397 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco05g0679 571 ProSitePatterns Serine/Threonine protein kinases active-site signature. 233 245 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco05g0679 571 Gene3D Phosphorylase Kinase; domain 1 100 195 - -
Cco05g0679 571 PANTHER CELL DIVISION PROTEIN KINASE 112 397 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Cco05g0679 571 ProSiteProfiles Protein kinase domain profile. 113 397 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco05g0679 571 SUPERFAMILY Protein kinase-like (PK-like) 106 402 IPR011009 -
Cco05g0679 571 FunFam probable serine/threonine-protein kinase At1g54610 196 437 - -
Cco05g0679 571 MobiDBLite consensus disorder prediction 1 85 - -
Cco05g0679 571 FunFam probable serine/threonine-protein kinase At1g54610 100 195 - -
Cco05g0679 571 Gene3D Transferase(Phosphotransferase) domain 1 196 436 - -
Cco05g0679 571 CDD STKc_CDK9_like 113 397 - -
Cco05g0679 571 MobiDBLite consensus disorder prediction 477 498 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1793 Cco-Chr1:30641177 Cco05g0679 Cco-Chr5:5590154 5.80E-160 dispersed
Cco02g1754 Cco-Chr2:30303719 Cco05g0679 Cco-Chr5:5590154 9.20E-225 dispersed
Cco02g1891 Cco-Chr2:31790860 Cco05g0679 Cco-Chr5:5590154 8.10E-161 dispersed
Cco03g0396 Cco-Chr3:4291563 Cco05g0679 Cco-Chr5:5590154 7.70E-203 dispersed
Cco03g1703 Cco-Chr3:31767472 Cco05g0679 Cco-Chr5:5590154 2.50E-168 dispersed
Cco03g1705 Cco-Chr3:31788962 Cco05g0679 Cco-Chr5:5590154 1.30E-56 dispersed
Cco05g0679 Cco-Chr5:5590154 Cco05g1100 Cco-Chr5:9812202 6.80E-183 dispersed
Cco05g0674 Cco-Chr5:5542546 Cco05g0679 Cco-Chr5:5590154 1.10E-21 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86830 PF00069 Pkinase 2.80E-68 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0679 K08819 - csv:101217952 1076.23