Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0690 ATGGGTGGGTGTTTTCCTTGTTTTGGATCCTCCGATGAAGATGGTAATGGTGTGAAAGAAGCTACTAAGAATGATTCAGCCAAGGATGGCTCCACCGCTCAGTCTCACCATGTTAGAAGAGTGAGCTCAGATAAATCGAAGTCACGGAGTGTATCTGATGCTAAGAAGGAGCCAACTGTTCAAAAGGATGGAACAACAGCACATATTGCTGCTCAAACATTTACATTCCGGGAGCTTGCTACAGCCACGAAGAACTTTAGATCAGAATGCTTGCTCGGAGAAGGGGGGTTTGGAAGGGTTTACAAAGGTCGCTTGGAGAGCACAGGACAGGTAGTGGCTGTGAAGCAGCTTGACCGTAATGGTCTTCAAGGAAATCGGGAATTTTTGGTGGAGGTTCTAATGCTTAGCCTGTTACATCACCCTAATCTTGTTAACTTGATAGGCTATTGTGCTGACGGGGATCAACGTCTTCTTGTTTATGAGTTCATGCCATTGGGTTCATTGGAAGATCATTTGCATGACCTTCCACCAGATAAGGAGCCCTTGGATTGGAATACGAGAATGAAGATTGCAGCTGGTGCTGCAAAAGGATTGGAATATTTGCATGACAAAGCAAACCCGCCTGTTATATATCGAGACTTGAAGTCGTCTAATATTCTTCTTGACGAGGGCTACCACCCCAAGCTGTCAGATTTCGGTCTTGCAAAACTGGGTCCAGTTGGTGACAAGACTCATGTCTCTACGAGAGTGATGGGAACATACGGTTACTGTGCTCCTGAGTATGCCATGACTGGCCAACTCACTCTCAAATCGGATGTATATAGTTTTGGAGTTGTCTTTCTGGAACTTATCACGGGGCGCAAGGCAATCGATAATACTAGAGGTCCAGGGGAGCATAATCTTGTGGCATGGGCTCGGCCACTTTTTAAAGATCGCCGGAAGTTCCCTAAGATGGCTGATCCACTACTGCAGGGTCGATATCCCATGCGAGGACTTTATCAGGCATTGGCAGTTGCAGCAATGTGCTTACAGGAACAGGCTGCAACAAGACCTCTAATTGGGGATGTTGTTACTGCTTTGACGTATTTAGCTTCCCAAACTTATGATCCTAATGCAGCTGCTTCTCAAAGCAATCGAATGGGTGGATCTACTCCACGAGCCCGAGATGAGCGGAGAGGTTTTCCAGATGGACTGGATAGCCCTGATGAGCGTGGACGAGGACGTGGTTCCCCATCGAACTACAGAAACTCACCTGATTACCGAAAGAAAGACCTCCATAGGGAAATGAGTTGTGGAGGTACAGAGCTGAGCAAAATCGACACTGGAGGCGGATCTGGTCGAAAATGGGGATTGGATGAGCTAGAGCGACAAGAATCTCTGCGAGACAGTCCTGTATATACTGGGAGAGCAAGGGAAACACCAAGGAACCGCGACCTAAACAGAGAACGTGCAGTTGCAGAAGCAAAAGAAATGAAGTTGCCAGTGCCTACTAGACTACAGGTAAAAATTGCAGGAAGAAGAGGAAGGAAAGATTCAGATTACAAAACTACAGGTTTTACTGTTGTTACTGGTGGTTCTTCTATGAGTGTGGAAAACAATGGTGAGGTAAAGAAAGAGGGAGAATGGTTATCGAATCAAGGTGTCGAGCTTAGGTTGGTTGGTCGGTTCCTGGTTGAACCATCATTTATCTTTCCTCGATTCAAGTCGGTGCCGTCGCCGGTAGTTGAACGTGTCGATCATCGGCAGAACCGCCAAATTGCCGGGCTGCTTTTCTCCTTTTCCAAATTGTTGACAGTGGCGATTTTTGCTTGCCTGATCGCTTTTTCCGTCGGAAGGGAGTTCAGATTGAACCACAAGCACAGCGGTGATGATATTTCCTTTAACCATACTCTTGCCGAAATCTTGGTGGAGTATGCTTCTGCGGCATACATATCTGATTTAACGGAACTGTTTACTTGGACATGCACAAGATGCGATGACCTGACTCAGGGGTTTGAAGTTATAGAACTGGTTGTTGATGTCCAGCACTGCCTACAGGCATATGTTGGAGTAGCAAAGAGTCTTAATGCTGTCATTATTGCTTTTAGAGGAACTCAAGAAAACAGCATACAGAACTGGATTGAAGACCTATACTGGAAGCAGCTTGACCTGATGTACCCTGGCATGCCAGATGCAATGGTGCACCATGGGTTTTATTATGCTTATCACAATACAACAATACGCTCTGCAATATTAAGTGCTGTTGATAGAGCCAGGAAGTTCTATGGTAACCTTGACATCATGGTGACTGGACATTCAATGGGAGGGGCAATGGCAGCATTTTGTGGCCTTGATCTTGCAGTTAACTACAATTCCCAGAATGTCCAGGTTATTACATTTGGACAACCTCGTATTGGCAATGCAGTATTTGCATCTTACTATAGCAATATAGTGCCAAATACGTTTCGGGTTACGAATGGAAATGATGTCGTCCCCCATTTGCCTCCATTTTATGCTTATTTTCCTAAAAAGACATATCACCATTTTCCTAGAGAGGTTTGGCTTTATAACGTTGGATTCGGAAGTTTTGTTTATCAAGTTGAAAAGGTTTGTGATGATTCTGGTGAAGACCCATCTTGTAGCAGGTCTGTCTCAGGGAAAAGTATTTCAGATCATTTGGTGTACTATGGTGTTGAGTTAAGTAGTCCAGCATGGAGATCATGTAGATTTGTAATGGATCCTCCTCTGGCGGCATACGGAGCAACAGATCTGAACGGAAACCAAGTTTTCTCTAGGGATCCTGGAATTCCTCTTATCAGACTGAACAAACAATCGTATTGTTATTTTGATGAAGGAAAATACTCAGGTGCAACCGAGCTGTATTTATCTCTTGTTCAGCCCCGCCCCTGTTGCACCCAATTAAAAATTGGAGTCAAGAGCGAATAG 2925 44.96 MGGCFPCFGSSDEDGNGVKEATKNDSAKDGSTAQSHHVRRVSSDKSKSRSVSDAKKEPTVQKDGTTAHIAAQTFTFRELATATKNFRSECLLGEGGFGRVYKGRLESTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPPDKEPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKSSNILLDEGYHPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVFLELITGRKAIDNTRGPGEHNLVAWARPLFKDRRKFPKMADPLLQGRYPMRGLYQALAVAAMCLQEQAATRPLIGDVVTALTYLASQTYDPNAAASQSNRMGGSTPRARDERRGFPDGLDSPDERGRGRGSPSNYRNSPDYRKKDLHREMSCGGTELSKIDTGGGSGRKWGLDELERQESLRDSPVYTGRARETPRNRDLNRERAVAEAKEMKLPVPTRLQVKIAGRRGRKDSDYKTTGFTVVTGGSSMSVENNGEVKKEGEWLSNQGVELRLVGRFLVEPSFIFPRFKSVPSPVVERVDHRQNRQIAGLLFSFSKLLTVAIFACLIAFSVGREFRLNHKHSGDDISFNHTLAEILVEYASAAYISDLTELFTWTCTRCDDLTQGFEVIELVVDVQHCLQAYVGVAKSLNAVIIAFRGTQENSIQNWIEDLYWKQLDLMYPGMPDAMVHHGFYYAYHNTTIRSAILSAVDRARKFYGNLDIMVTGHSMGGAMAAFCGLDLAVNYNSQNVQVITFGQPRIGNAVFASYYSNIVPNTFRVTNGNDVVPHLPPFYAYFPKKTYHHFPREVWLYNVGFGSFVYQVEKVCDDSGEDPSCSRSVSGKSISDHLVYYGVELSSPAWRSCRFVMDPPLAAYGATDLNGNQVFSRDPGIPLIRLNKQSYCYFDEGKYSGATELYLSLVQPRPCCTQLKIGVKSE 974
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5660093 5672135 - CcPI632755_05g006900.1 Cco05g0690 178318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0690 974 MobiDBLite consensus disorder prediction 417 433 - -
Cco05g0690 974 FunFam Serine/threonine-protein kinase PBS1 163 378 - -
Cco05g0690 974 Gene3D alpha/beta hydrolase 628 896 IPR029058 -
Cco05g0690 974 Pfam Lipase (class 3) 692 830 IPR002921 GO:0006629(InterPro)
Cco05g0690 974 ProSiteProfiles Protein kinase domain profile. 86 363 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco05g0690 974 PANTHER OS07G0668900 PROTEIN 37 379 - -
Cco05g0690 974 ProSitePatterns Serine/Threonine protein kinases active-site signature. 209 221 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco05g0690 974 ProSitePatterns Protein kinases ATP-binding region signature. 92 115 IPR017441 GO:0005524(InterPro)
Cco05g0690 974 SMART serkin_6 86 363 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco05g0690 974 SUPERFAMILY alpha/beta-Hydrolases 628 892 IPR029058 -
Cco05g0690 974 MobiDBLite consensus disorder prediction 372 456 - -
Cco05g0690 974 MobiDBLite consensus disorder prediction 16 62 - -
Cco05g0690 974 Gene3D Transferase(Phosphotransferase) domain 1 163 381 - -
Cco05g0690 974 MobiDBLite consensus disorder prediction 384 409 - -
Cco05g0690 974 MobiDBLite consensus disorder prediction 1 63 - -
Cco05g0690 974 Gene3D Phosphorylase Kinase; domain 1 56 162 - -
Cco05g0690 974 FunFam Serine/threonine-protein kinase PBS1 59 162 - -
Cco05g0690 974 CDD STKc_IRAK 92 361 - -
Cco05g0690 974 CDD Lipase_3 628 848 - -
Cco05g0690 974 Pfam Protein kinase domain 90 297 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco05g0690 974 SUPERFAMILY Protein kinase-like (PK-like) 68 360 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1486 Cco-Chr2:27375699 Cco05g0690 Cco-Chr5:5660093 2.60E-160 dispersed
Cco04g0611 Cco-Chr4:19956790 Cco05g0690 Cco-Chr5:5660093 6.10E-65 dispersed
Cco04g2114 Cco-Chr4:35006454 Cco05g0690 Cco-Chr5:5660093 5.30E-42 dispersed
Cco05g0690 Cco-Chr5:5660093 Cco10g2058 Cco-Chr10:33962794 7.60E-150 dispersed
Cco07g1501 Cco-Chr7:29081977 Cco05g0690 Cco-Chr5:5660093 2.40E-07 dispersed
Cco03g1134 Cco-Chr3:21596316 Cco05g0690 Cco-Chr5:5660093 1.10E-121 transposed
Cco06g0185 Cco-Chr6:1946878 Cco05g0690 Cco-Chr5:5660093 4.30E-175 transposed
Cco06g0546 Cco-Chr6:5907985 Cco05g0690 Cco-Chr5:5660093 2.50E-122 transposed
Cco03g1745 Cco-Chr3:32165403 Cco05g0690 Cco-Chr5:5660093 2.80E-80 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86831 PF00069 Pkinase 3.00E-45 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0690 - - - 0.0