Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco05g0690 | ATGGGTGGGTGTTTTCCTTGTTTTGGATCCTCCGATGAAGATGGTAATGGTGTGAAAGAAGCTACTAAGAATGATTCAGCCAAGGATGGCTCCACCGCTCAGTCTCACCATGTTAGAAGAGTGAGCTCAGATAAATCGAAGTCACGGAGTGTATCTGATGCTAAGAAGGAGCCAACTGTTCAAAAGGATGGAACAACAGCACATATTGCTGCTCAAACATTTACATTCCGGGAGCTTGCTACAGCCACGAAGAACTTTAGATCAGAATGCTTGCTCGGAGAAGGGGGGTTTGGAAGGGTTTACAAAGGTCGCTTGGAGAGCACAGGACAGGTAGTGGCTGTGAAGCAGCTTGACCGTAATGGTCTTCAAGGAAATCGGGAATTTTTGGTGGAGGTTCTAATGCTTAGCCTGTTACATCACCCTAATCTTGTTAACTTGATAGGCTATTGTGCTGACGGGGATCAACGTCTTCTTGTTTATGAGTTCATGCCATTGGGTTCATTGGAAGATCATTTGCATGACCTTCCACCAGATAAGGAGCCCTTGGATTGGAATACGAGAATGAAGATTGCAGCTGGTGCTGCAAAAGGATTGGAATATTTGCATGACAAAGCAAACCCGCCTGTTATATATCGAGACTTGAAGTCGTCTAATATTCTTCTTGACGAGGGCTACCACCCCAAGCTGTCAGATTTCGGTCTTGCAAAACTGGGTCCAGTTGGTGACAAGACTCATGTCTCTACGAGAGTGATGGGAACATACGGTTACTGTGCTCCTGAGTATGCCATGACTGGCCAACTCACTCTCAAATCGGATGTATATAGTTTTGGAGTTGTCTTTCTGGAACTTATCACGGGGCGCAAGGCAATCGATAATACTAGAGGTCCAGGGGAGCATAATCTTGTGGCATGGGCTCGGCCACTTTTTAAAGATCGCCGGAAGTTCCCTAAGATGGCTGATCCACTACTGCAGGGTCGATATCCCATGCGAGGACTTTATCAGGCATTGGCAGTTGCAGCAATGTGCTTACAGGAACAGGCTGCAACAAGACCTCTAATTGGGGATGTTGTTACTGCTTTGACGTATTTAGCTTCCCAAACTTATGATCCTAATGCAGCTGCTTCTCAAAGCAATCGAATGGGTGGATCTACTCCACGAGCCCGAGATGAGCGGAGAGGTTTTCCAGATGGACTGGATAGCCCTGATGAGCGTGGACGAGGACGTGGTTCCCCATCGAACTACAGAAACTCACCTGATTACCGAAAGAAAGACCTCCATAGGGAAATGAGTTGTGGAGGTACAGAGCTGAGCAAAATCGACACTGGAGGCGGATCTGGTCGAAAATGGGGATTGGATGAGCTAGAGCGACAAGAATCTCTGCGAGACAGTCCTGTATATACTGGGAGAGCAAGGGAAACACCAAGGAACCGCGACCTAAACAGAGAACGTGCAGTTGCAGAAGCAAAAGAAATGAAGTTGCCAGTGCCTACTAGACTACAGGTAAAAATTGCAGGAAGAAGAGGAAGGAAAGATTCAGATTACAAAACTACAGGTTTTACTGTTGTTACTGGTGGTTCTTCTATGAGTGTGGAAAACAATGGTGAGGTAAAGAAAGAGGGAGAATGGTTATCGAATCAAGGTGTCGAGCTTAGGTTGGTTGGTCGGTTCCTGGTTGAACCATCATTTATCTTTCCTCGATTCAAGTCGGTGCCGTCGCCGGTAGTTGAACGTGTCGATCATCGGCAGAACCGCCAAATTGCCGGGCTGCTTTTCTCCTTTTCCAAATTGTTGACAGTGGCGATTTTTGCTTGCCTGATCGCTTTTTCCGTCGGAAGGGAGTTCAGATTGAACCACAAGCACAGCGGTGATGATATTTCCTTTAACCATACTCTTGCCGAAATCTTGGTGGAGTATGCTTCTGCGGCATACATATCTGATTTAACGGAACTGTTTACTTGGACATGCACAAGATGCGATGACCTGACTCAGGGGTTTGAAGTTATAGAACTGGTTGTTGATGTCCAGCACTGCCTACAGGCATATGTTGGAGTAGCAAAGAGTCTTAATGCTGTCATTATTGCTTTTAGAGGAACTCAAGAAAACAGCATACAGAACTGGATTGAAGACCTATACTGGAAGCAGCTTGACCTGATGTACCCTGGCATGCCAGATGCAATGGTGCACCATGGGTTTTATTATGCTTATCACAATACAACAATACGCTCTGCAATATTAAGTGCTGTTGATAGAGCCAGGAAGTTCTATGGTAACCTTGACATCATGGTGACTGGACATTCAATGGGAGGGGCAATGGCAGCATTTTGTGGCCTTGATCTTGCAGTTAACTACAATTCCCAGAATGTCCAGGTTATTACATTTGGACAACCTCGTATTGGCAATGCAGTATTTGCATCTTACTATAGCAATATAGTGCCAAATACGTTTCGGGTTACGAATGGAAATGATGTCGTCCCCCATTTGCCTCCATTTTATGCTTATTTTCCTAAAAAGACATATCACCATTTTCCTAGAGAGGTTTGGCTTTATAACGTTGGATTCGGAAGTTTTGTTTATCAAGTTGAAAAGGTTTGTGATGATTCTGGTGAAGACCCATCTTGTAGCAGGTCTGTCTCAGGGAAAAGTATTTCAGATCATTTGGTGTACTATGGTGTTGAGTTAAGTAGTCCAGCATGGAGATCATGTAGATTTGTAATGGATCCTCCTCTGGCGGCATACGGAGCAACAGATCTGAACGGAAACCAAGTTTTCTCTAGGGATCCTGGAATTCCTCTTATCAGACTGAACAAACAATCGTATTGTTATTTTGATGAAGGAAAATACTCAGGTGCAACCGAGCTGTATTTATCTCTTGTTCAGCCCCGCCCCTGTTGCACCCAATTAAAAATTGGAGTCAAGAGCGAATAG | 2925 | 44.96 | MGGCFPCFGSSDEDGNGVKEATKNDSAKDGSTAQSHHVRRVSSDKSKSRSVSDAKKEPTVQKDGTTAHIAAQTFTFRELATATKNFRSECLLGEGGFGRVYKGRLESTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPPDKEPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKSSNILLDEGYHPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVFLELITGRKAIDNTRGPGEHNLVAWARPLFKDRRKFPKMADPLLQGRYPMRGLYQALAVAAMCLQEQAATRPLIGDVVTALTYLASQTYDPNAAASQSNRMGGSTPRARDERRGFPDGLDSPDERGRGRGSPSNYRNSPDYRKKDLHREMSCGGTELSKIDTGGGSGRKWGLDELERQESLRDSPVYTGRARETPRNRDLNRERAVAEAKEMKLPVPTRLQVKIAGRRGRKDSDYKTTGFTVVTGGSSMSVENNGEVKKEGEWLSNQGVELRLVGRFLVEPSFIFPRFKSVPSPVVERVDHRQNRQIAGLLFSFSKLLTVAIFACLIAFSVGREFRLNHKHSGDDISFNHTLAEILVEYASAAYISDLTELFTWTCTRCDDLTQGFEVIELVVDVQHCLQAYVGVAKSLNAVIIAFRGTQENSIQNWIEDLYWKQLDLMYPGMPDAMVHHGFYYAYHNTTIRSAILSAVDRARKFYGNLDIMVTGHSMGGAMAAFCGLDLAVNYNSQNVQVITFGQPRIGNAVFASYYSNIVPNTFRVTNGNDVVPHLPPFYAYFPKKTYHHFPREVWLYNVGFGSFVYQVEKVCDDSGEDPSCSRSVSGKSISDHLVYYGVELSSPAWRSCRFVMDPPLAAYGATDLNGNQVFSRDPGIPLIRLNKQSYCYFDEGKYSGATELYLSLVQPRPCCTQLKIGVKSE | 974 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 5660093 | 5672135 | - | CcPI632755_05g006900.1 | Cco05g0690 | 178318 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco05g0690 | 974 | MobiDBLite | consensus disorder prediction | 417 | 433 | - | - | |
Cco05g0690 | 974 | FunFam | Serine/threonine-protein kinase PBS1 | 163 | 378 | - | - | |
Cco05g0690 | 974 | Gene3D | alpha/beta hydrolase | 628 | 896 | IPR029058 | - | |
Cco05g0690 | 974 | Pfam | Lipase (class 3) | 692 | 830 | IPR002921 | GO:0006629(InterPro) | |
Cco05g0690 | 974 | ProSiteProfiles | Protein kinase domain profile. | 86 | 363 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco05g0690 | 974 | PANTHER | OS07G0668900 PROTEIN | 37 | 379 | - | - | |
Cco05g0690 | 974 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 209 | 221 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco05g0690 | 974 | ProSitePatterns | Protein kinases ATP-binding region signature. | 92 | 115 | IPR017441 | GO:0005524(InterPro) | |
Cco05g0690 | 974 | SMART | serkin_6 | 86 | 363 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco05g0690 | 974 | SUPERFAMILY | alpha/beta-Hydrolases | 628 | 892 | IPR029058 | - | |
Cco05g0690 | 974 | MobiDBLite | consensus disorder prediction | 372 | 456 | - | - | |
Cco05g0690 | 974 | MobiDBLite | consensus disorder prediction | 16 | 62 | - | - | |
Cco05g0690 | 974 | Gene3D | Transferase(Phosphotransferase) domain 1 | 163 | 381 | - | - | |
Cco05g0690 | 974 | MobiDBLite | consensus disorder prediction | 384 | 409 | - | - | |
Cco05g0690 | 974 | MobiDBLite | consensus disorder prediction | 1 | 63 | - | - | |
Cco05g0690 | 974 | Gene3D | Phosphorylase Kinase; domain 1 | 56 | 162 | - | - | |
Cco05g0690 | 974 | FunFam | Serine/threonine-protein kinase PBS1 | 59 | 162 | - | - | |
Cco05g0690 | 974 | CDD | STKc_IRAK | 92 | 361 | - | - | |
Cco05g0690 | 974 | CDD | Lipase_3 | 628 | 848 | - | - | |
Cco05g0690 | 974 | Pfam | Protein kinase domain | 90 | 297 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco05g0690 | 974 | SUPERFAMILY | Protein kinase-like (PK-like) | 68 | 360 | IPR011009 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g1486 | Cco-Chr2:27375699 | Cco05g0690 | Cco-Chr5:5660093 | 2.60E-160 | dispersed | |
Cco04g0611 | Cco-Chr4:19956790 | Cco05g0690 | Cco-Chr5:5660093 | 6.10E-65 | dispersed | |
Cco04g2114 | Cco-Chr4:35006454 | Cco05g0690 | Cco-Chr5:5660093 | 5.30E-42 | dispersed | |
Cco05g0690 | Cco-Chr5:5660093 | Cco10g2058 | Cco-Chr10:33962794 | 7.60E-150 | dispersed | |
Cco07g1501 | Cco-Chr7:29081977 | Cco05g0690 | Cco-Chr5:5660093 | 2.40E-07 | dispersed | |
Cco03g1134 | Cco-Chr3:21596316 | Cco05g0690 | Cco-Chr5:5660093 | 1.10E-121 | transposed | |
Cco06g0185 | Cco-Chr6:1946878 | Cco05g0690 | Cco-Chr5:5660093 | 4.30E-175 | transposed | |
Cco06g0546 | Cco-Chr6:5907985 | Cco05g0690 | Cco-Chr5:5660093 | 2.50E-122 | transposed | |
Cco03g1745 | Cco-Chr3:32165403 | Cco05g0690 | Cco-Chr5:5660093 | 2.80E-80 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
86831 | PF00069 | Pkinase | 3.00E-45 | CL0016 | Cco | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco05g0690 | - | - | - | 0.0 |