Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0698 ATGAAGCCGTACGGTCAGTCTATTGAAGGTTCTCACTCCGATCCGTCACCTGAATGGACCGGTTCCGGACCTGATACACCCCATGGAGACTCGCTTTGGCCTTTGGGATCCAGGGAAAGGGAATCCTACCCTGAACGTCCTGAAGAGGCTGATTGTATATATTACCTACGTACGGGATTTTGTGGATATGGCTCTCGTTGTAGGTTCAATCATCCCCGTGAGCGTACCGCGGTTTTAGGAGGTTCGAGACCTGGTGGAAGAGAGTATCCCGAGCGAGTAGGGCAGCCTGTGTGTCAGTACTATATGAGGACAGGAATGTGCAAATTTGGTGCTTCCTGTAAGTATCACCATCCTCTGCAGGAAAGAGGTTCTCTCAGCCCCGTGTCGCTGAATTTCTATGGCTATCCACTACGGCCGGGTGAAAAGGAGTGTTCTTATTATTTGAAGAACGGGCAGTGCAAGTTTGGTGCTACGTGCAAATTTCATCACCCAGAACCAGCTGGCTTGCAGTTTCCAGCACCATCACCTGTTCAGGTTACACCAATGCCACCTCCAGTGCCTACGCCCTCTGTTTATCCTCCTTTGCAGTCTCCATCTGCTCATTCGTCACAACAATATGGAGTAATACTTGCAAGGCCTTCATTGCTGTCAAGCCCATATGTTCCTGGCCCTTATGGTCCTATGTTGGTTTCCCCAGGCGTTGTTCAATTCCCAAGTTGGAGTCCTTACCCAGCACCTATGAGTCCAGTAGCCTCTCCCAGTGCTCAACCTTCTGTTGGATCAGGGCCACTTTATGGTATGGCACATGTTTCGCCTTCTGCATCTGGGTTTGCGGGATCTTATCAACCCATGCCATCTGCTGGTCCATCAAGTACTAGCCAGAAGGAGCACTCATTTCCAGAAAGACCTGGGCAACCAGAGTGTCAATATTACATGAGAACGGGGGATTGTAAATTTGGATCTTCTTGTAGATACCATCACCCACCAGAATTGGTTACGTCGAGGCCAAGTGTTGTCCTTAGCCAACTAGGTCTTCCTCTACGTCCGGGTGCACCACCTTGTACTCACTTCATGCAACGAGGAATGTGCAAGTTTGGCCCTGCGTGCAAATTTGACCACTCGATGGATCGACTTAGTTACAGTCCATCTGCATCATCTCTTGCTGATATGCCAGTGGCACCCTACCCTGTGGGATCAGTAGCCGGTACTTTAGCCCCATCATCCTCATCCTCAGAGTTGAGGCCTGAACATTTTTCAGGATCCAGAAAGGATTCTAACCCTTCAAGAATGTCTTCATCAATGAGCACCTCTAGTGGATTGGTCGGTTCAACTACATCGAGGACAGAAATGCATTCTCATTCAAGTGTTCAACGGTCTTCTCAAAGTTCTGGCCCATCCATGGGCAGTACCTCCAGCACCACCCGTGCAGAGGGTCGGCACAAGCTTTCAATTCGAATTGAATATGAATTTGAAGCTGCGTTATTCCCACTCGTTTTTTTCCCTCATTTATTGTGGAAAAAGATGTATTTAAGACTCTGGGAGTCATCCCAATGGCAATGTGATCTTGAGAGGAATGATGATGCTTTGCTTACCCAGCAATACTTGAGTCTTTTTGTAAAGCAGGTTCCTGATTTAGTTTGTCTTGAAGAGGGAATCTTTTCAGATTCAGATATCCACTTCCTTTTCCCCTTTCTGAAGGTTACTGTTGGTTTCGAGAAAATTCTAGAAGAGACCCCATTTTGCAAAAGTTAA 1752 47.6 MKPYGQSIEGSHSDPSPEWTGSGPDTPHGDSLWPLGSRERESYPERPEEADCIYYLRTGFCGYGSRCRFNHPRERTAVLGGSRPGGREYPERVGQPVCQYYMRTGMCKFGASCKYHHPLQERGSLSPVSLNFYGYPLRPGEKECSYYLKNGQCKFGATCKFHHPEPAGLQFPAPSPVQVTPMPPPVPTPSVYPPLQSPSAHSSQQYGVILARPSLLSSPYVPGPYGPMLVSPGVVQFPSWSPYPAPMSPVASPSAQPSVGSGPLYGMAHVSPSASGFAGSYQPMPSAGPSSTSQKEHSFPERPGQPECQYYMRTGDCKFGSSCRYHHPPELVTSRPSVVLSQLGLPLRPGAPPCTHFMQRGMCKFGPACKFDHSMDRLSYSPSASSLADMPVAPYPVGSVAGTLAPSSSSSELRPEHFSGSRKDSNPSRMSSSMSTSSGLVGSTTSRTEMHSHSSVQRSSQSSGPSMGSTSSTTRAEGRHKLSIRIEYEFEAALFPLVFFPHLLWKKMYLRLWESSQWQCDLERNDDALLTQQYLSLFVKQVPDLVCLEEGIFSDSDIHFLFPFLKVTVGFEKILEETPFCKS 583
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5750258 5754979 - CcPI632755_05g006980.1 Cco05g0698 178326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0698 583 ProSiteProfiles Zinc finger C3H1-type profile. 138 166 IPR000571 GO:0046872(InterPro)
Cco05g0698 583 SUPERFAMILY CCCH zinc finger 352 379 IPR036855 GO:0046872(InterPro)
Cco05g0698 583 ProSiteProfiles Zinc finger C3H1-type profile. 46 74 IPR000571 GO:0046872(InterPro)
Cco05g0698 583 SUPERFAMILY CCCH zinc finger 140 166 IPR036855 GO:0046872(InterPro)
Cco05g0698 583 SUPERFAMILY CCCH zinc finger 48 75 IPR036855 GO:0046872(InterPro)
Cco05g0698 583 Gene3D - 300 384 - -
Cco05g0698 583 Gene3D - 90 171 - -
Cco05g0698 583 MobiDBLite consensus disorder prediction 1 44 - -
Cco05g0698 583 SMART c3hfinal6 46 73 IPR000571 GO:0046872(InterPro)
Cco05g0698 583 SMART c3hfinal6 348 375 IPR000571 GO:0046872(InterPro)
Cco05g0698 583 SMART c3hfinal6 92 119 IPR000571 GO:0046872(InterPro)
Cco05g0698 583 SMART c3hfinal6 138 165 IPR000571 GO:0046872(InterPro)
Cco05g0698 583 SMART c3hfinal6 302 329 IPR000571 GO:0046872(InterPro)
Cco05g0698 583 MobiDBLite consensus disorder prediction 278 305 - -
Cco05g0698 583 MobiDBLite consensus disorder prediction 278 299 - -
Cco05g0698 583 Gene3D - 37 89 - -
Cco05g0698 583 PANTHER PROTEIN PHOSPHATASE RELATED 38 376 IPR050974 GO:0003729(PANTHER)
Cco05g0698 583 ProSiteProfiles Zinc finger C3H1-type profile. 348 376 IPR000571 GO:0046872(InterPro)
Cco05g0698 583 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 350 375 IPR000571 GO:0046872(InterPro)
Cco05g0698 583 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 303 329 IPR000571 GO:0046872(InterPro)
Cco05g0698 583 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 48 73 IPR000571 GO:0046872(InterPro)
Cco05g0698 583 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 140 165 IPR000571 GO:0046872(InterPro)
Cco05g0698 583 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 95 118 IPR000571 GO:0046872(InterPro)
Cco05g0698 583 MobiDBLite consensus disorder prediction 403 476 - -
Cco05g0698 583 ProSiteProfiles Zinc finger C3H1-type profile. 92 120 IPR000571 GO:0046872(InterPro)
Cco05g0698 583 SUPERFAMILY CCCH zinc finger 306 329 IPR036855 GO:0046872(InterPro)
Cco05g0698 583 FunFam CCCH type zinc finger protein 300 385 - -
Cco05g0698 583 ProSiteProfiles Zinc finger C3H1-type profile. 302 330 IPR000571 GO:0046872(InterPro)
Cco05g0698 583 MobiDBLite consensus disorder prediction 424 476 - -
Cco05g0698 583 SUPERFAMILY CCCH zinc finger 94 122 IPR036855 GO:0046872(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1076 Cco-Chr3:18987124 Cco05g0698 Cco-Chr5:5750258 7.90E-22 dispersed
Cco05g0698 Cco-Chr5:5750258 Cco09g2493 Cco-Chr9:39116307 3.30E-07 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59244 PF00642 zf-CCCH 1.70E-07 CL0537 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0698 - - - 0.0