Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0701 ATGTATCATTTGTTTCGTAGAATCGTTCTTGTTAGACCTCCATCATCAGTCTTTTCTCATGGATTTTTTGAAAGTCCGTTGAAATTTCTCAAATACTTATCGACCTCTTCTGAGATTGTATCATCTCCGGAATCTGCTTCGTTGGCTTCTAACTTTGTTCAGCTTAAGAACAATATGAATCCTGTAATTATGTTCTTTGAAAATCATGGATTCTCTAAATCACAGATCTCTGAGCTTGTCAAGAAGTGCCCTCAAGTTCTTTCAGCGAAACCCGAGAAAAGCCTATTGCCCAAATTGTTGTTCTTTCAATCTAAAGGCCTTTCTTCCCCCGAGGTTGCCAAATTAATAAGTGTTTTTCCTACTGTTTTAACACGAAGTTTAAACAGACAAATTATTCCAGCATTTGATTACATTCAAGCCCTGCTTCGAACTGAGGAGAAGACTATCGCAGCCATAAAACGCTTTGCGGGTATTCTCACTTGGAATCTTCGAAATTCAACTCGTCCCAATATTGAAATTCTGAAAGAAATTGGCGTGCCTGATTCCAACATTTCAACCATTCTTCTGTACCAGCCTAGAGTGTTCTTGGTAAGTTCCATCCGATTCAAGGAGATTGTAGAGGAAGTTAAGGAAATGGGATTCAACCCTCTGCGATTGAAGTTTGTTCTTGCTGTTTTTGCTCTGCGAACAATGAGCAAATCTACATGGGATAAGAAGATTGAAGTTTATAGGAAATGGGGATGGCTTGAAGAAGAGATCCGTTTGGCTTTTGGAAGGCATCCATGGTGTATGATGGCTTCTGAGGATAAGATTAATGGTGTAATGGATTTTTTTGTCAACAAGATTGGATGTGAATCTTCTTTCATTGCTAGGAGACCTGCTCTAATTTCATTGAGTTTAAAGAAGAGGATTTTGCCTAGAGGCTCAGTTTATCAAGTTTTGCTGTCGAAGGGTTTACTCAAGAAAGATGTGAATCTTCCATCGTTGTTTGAGTGTACTGAAAACCGGTTCTTGGACAAATTCATCAACCCCTATAAGAAGCGGATACCTGGATTGTTGAAATTGTATGAAGAGAAAGTAAAAGATTCTGATAGATGA 1098 38.52 MYHLFRRIVLVRPPSSVFSHGFFESPLKFLKYLSTSSEIVSSPESASLASNFVQLKNNMNPVIMFFENHGFSKSQISELVKKCPQVLSAKPEKSLLPKLLFFQSKGLSSPEVAKLISVFPTVLTRSLNRQIIPAFDYIQALLRTEEKTIAAIKRFAGILTWNLRNSTRPNIEILKEIGVPDSNISTILLYQPRVFLVSSIRFKEIVEEVKEMGFNPLRLKFVLAVFALRTMSKSTWDKKIEVYRKWGWLEEEIRLAFGRHPWCMMASEDKINGVMDFFVNKIGCESSFIARRPALISLSLKKRILPRGSVYQVLLSKGLLKKDVNLPSLFECTENRFLDKFINPYKKRIPGLLKLYEEKVKDSDR 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5793620 5794717 - CcPI632755_05g007010.1 Cco05g0701 178329

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0701 365 Gene3D Transcription termination factor 3, mitochondrial 144 349 IPR038538 -
Cco05g0701 365 PANTHER CGI-12 PROTEIN-RELATED 30 352 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cco05g0701 365 Pfam mTERF 231 338 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cco05g0701 365 Pfam mTERF 64 216 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cco05g0701 365 FunFam Mitochondrial transcription termination factor-like 127 349 - -
Cco05g0701 365 SMART mt_12 113 144 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cco05g0701 365 SMART mt_12 286 320 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cco05g0701 365 SMART mt_12 254 285 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cco05g0701 365 SMART mt_12 149 180 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cco05g0701 365 SMART mt_12 185 215 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cco05g0701 365 SMART mt_12 77 108 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0701 K15031 - - csv:116402729 494.582
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0701 Cco-Chr5:5793620 Cco06g0535 Cco-Chr6:5819879 2.20E-46 dispersed
Cco05g0701 Cco-Chr5:5793620 Cco05g0703 Cco-Chr5:5796978 4.40E-42 proximal
Cco05g0700 Cco-Chr5:5785799 Cco05g0701 Cco-Chr5:5793620 8.10E-134 tandem
Cco05g0701 Cco-Chr5:5793620 Cco05g0702 Cco-Chr5:5796618 3.50E-47 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g337 . . . Bda08g00283 . Bpe14g01137 . Bma05g01055 Cmo08g01188 . Cma06g01484 Cma14g01633 . . . . . . . . . . . . Cla06g00494 Cam06g0531 Cec06g0531 Cco06g0535 Clacu06g0515 Cmu06g0517 Cre06g1288 Cone11ag0062 Cone18ag1417 . . Lsi05g01523 . . Cme06g00711 Blo02g00516 Blo07g00180 Bda11g00534 Bda13g00173 Bpe05g00845 Bpe13g00655 . Bma06g01511 Sed02g1207 . Cmo14g01671 Cma08g01215 . Car08g01086 . . . Bhi12g02086 Tan06g0862 Cmetu06g1898 . . . Lcy13g0191 Cla05g00633 Cam05g0694 Cec05g0705 Cco05g0701 Clacu05g0689 Cmu05g0656 Cre05g0727 Lsi09g01413 Csa03g01436 Chy06g00675 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000251 8 3 2 6 4 3 3 5 5 12 2 3 4 4 8 6 2 8 2 4 10 4 4 7 4 5 2 16 4 6 156
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59246 PF02536 mTERF 5.00E-24 No_clan Cco TR