Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0704 ATGACGCGCTTTGACGGGGACCAGCCATTTGAAAATCGATTGCTGAAGCTCATGGCCCCGTCAAGAAAGTCCAGAAGTGTCAATAAGCGGTTTTCTACTGCTAACGAGGCCTCCTCAAGCAAGTACGTGGAAGATGCTAGCAAAAGCAAGCAAAAGAAGAGGAAATTTGCTGACCTGTTAGGGCCGCAATGGAGTAAGGACGAGGTTGAGCAGTTCTATGAAGCGTATCGTAAATATGGAAAAGATTGGAAGAAGGTAGCCGCTGCAGTAAGGAACCGTTCTACAGAAATGGTTGAGGCTCTTTTCACCATGAATAGGGCCTATTTATCACTTCCAGAGGGCACTGCTTCAGTTGTTGGATTAATTGCAATGATGACTGATCACTACAGCGTACTGAGAGACAGTGAAAGTGAACAAGAAAGCAACGATGATTCGGGAGCAATAAGAAAGCCTCAAAAGCGACTGCGTGGAAAGTCACGAAGTAACAACTCAAAAGGATTGGATGCACATTTTGGAGATGCTTCACAATCACAGTCACTTCCAACAAATTATGGCTGCCTGTCATTGTTGAAGAAGAGGCGTTCTGGAATTAAACCTCATGCTGTTGGAAAACGGACACCACGTGTTCCTGTATCATATTCATATGATAAAGATAGCAGAGAGAAGCTTTTTTCACCCTCCCGGCATAATAGCAAGGCAAAGGTTGATGATCCAAATGATGATGATGTTGCTCATGAGATAGCTTTAGTTTTAACAGAGGCTTCACAACGAGATGGTTCTCCTCAACTTTCACAAACACCAAATCCAAAAATAGAAGGTCATGTACTTTCACCTATCCAAAATGACAGGATGCGAAGTGAATCAGACATGATGAGCATGAAGTTTCGTTGTAGTGAAATGGATGAAGGTGGTTGTGAATTAAGCTTAGGAAGCACTGGAGCTGATAACGCAGACTATGACCTGGGGAAAAATACTCGTGAGATTCAAAGAAAGGGTAAAAGGTACTATGGAAAGAAGCCAGAAGTTGAAGAAAGTATGTACAACCACTTGGATGACATTAAGGAAGCTTGTAGTGGGACGGAAGAGGGACAAAAATCAGGCAGTTTGAGGGGAAAACTTGAAACTGAGGATTTAGATGTAAAATCTGTGAGATCCTCTTTTAAGGGCCCGAGGAAACGAAGTAAGAAAGCTCTATTCGGAGATGAAACTTCAGCATTTGATGCACTGCAAACTTTAGCTGATTTGTCTCTAATGATGCCAGACACAAATGCTGAGAGTGAGCCTTCTGCTAAGGTTAAAGAAGAAAATCCTGATGTCACGGACAAGTCTAAAATGAAAGGGAGTCATCCAGTTGCTGGAGCTGAAATCTCTGCTCTCAAAACATCTAAGACGGGAAAAGCTTTTGGCAACAATGTCGGTCCTATTCCTGAAGCAGAGGGAATTCAAGGATCCAATAATGGAAATCGAAAAAGGAAACTGAAGTCTTCTCCATTTAAAATATCATCTAAAGATGAAGATAACAATGATTCTCGTGTCAATGACAATCTGAAAATCAAGGCTGCAGATGAAGCAAAGAGTTCCGTTGGTAAAGTTAAACGTTCCCCTCATAATGCTGGACCTGCAAAGTCTGGCAAAATATCAAAACCTCTAGATCATCACTCATCTTCAAGTACTGACCATAAAAGAGAAGATGGTGACTATGCTTTATCCACAACACAAGTTCTAACAAATAATCCAACCAGCTTACCTACCAAACTTAGGAGCAGGCGGAAGATGAACCTGGGGAAGCCACAAAGAGATTCAAAGCTTGCTGATAATACTTCGATCGATCAACTCAATATAACTGCTCAATCAATAGATGATAGACCTCATGATCTCAAGGAGCGGCATTCTAATTGCCTATCTTGGCATAAATTGCGCAGATGGTGTGTTTTTGAGTGGTTCTATAGTGCAATCGATTTTCCATGGTTTGCAAAATGTGAGTTCGTAGAGTACTTAAACCACGTTGGATTAGGTCATATTCCTAGATTGACACGTGTTGAGTGGGGTGTTATTCGAAGTTCCCTTGGGAGACCACGGAGATTCTCAGCTCAATTCTTGAAGGAAGAAAAACAGAAGCTAAATCAATATAGGGAATCTGTTAGGAAACACTATTCTGAACTTCGTGCAGGCACAAGGGAAGGACTTCCAACTGATTTAGCTCGGCCATTATCTGTTGGACAGCGAGTTATTGCCATTCATCCAAAAACAAGAGAGATCCATGATGGAAGTGTACTTACTGTTGACTATAGCAGGTGTCGTGTTCAGTTTGACCGACCTGAACTTGGGGTTGAATTTGTCATGGATATCGAGTGTATGCCTTTAAATCCAGTTGAAAACATGCCTGCAAATTTGTCAAGACATGGTGTGGCTCTTGATAAAATATTTGGGAATCTCAACGATGCTAAGATTAATGGCTTACTGAAGGAAGCGAAGATTGAAGACTATATGAAATCAACCAGCAATGATAAACTTGAAAGCACGGAGGGTTCTGTGTATATTTCCCCTTCCACTCATCACATCAACAAATTAATTAAACAAGCAAAGGTTGATCTTGGGTGCTCTAATCTACAAGCTAAATTTGGGCTTAGTGAGACTGTCGGTATTCAACAGGAGGCAAGTTCCCAACCTTCTGCCCTTGCTCAAATTCAAGCAAAAGAAGCTGATGTTCATGCTCTTTCTGAATTGTCACGTGCACTTGACAAGAAGGAGGTGGTGGTGTCTGAATTGAAGCGTCTGAATGATGAGGTGTTGGAAAACCAAATAAATGGAGACAACTTGCTCAAGGATTCAGAGAACTTTAAGAAGCAATATGCTGCTGTACTATTACAGTTGAATGAAGTTAATGAACAGGTTTCCTCTGCTCTGTATTGCTTGAGGCAGCGTAACACGTATCAAGGGACTTCACCATTGATGTTCCTCAAGCCAGTGCATGATTTGGGTGACCCTTGTTCTCATTCTCAAGAACCTGGTTCCCATGTGGCTGAAATTGTTGGAAGTTCCAGAGCAAAGGCTCAAACAATGATCAACGAAGCAATGCAGGCAATTCTAGCTCTGAAAAAAGGAGAAGGTAATTTGGAGAATATTGAAGAAGCCATTGATTTTGTGAGTAATAGACTCTCAGTGGATGATTTGGCCTTGCCAACTGTGAGAACAACAGCTGCAGATACTAGTAATGCCGCTCCAGTATCTCAGAATCATTTCAATGCGTGTACATCAAACCCGTCGAGTGCTAATTATGTAGTTGGTCCCAAGTCCAATGGCCCATCCGACAAGACTGAAGTGGAGATCCCTTCAGAACTTATTGCACACTGTGTAGCCACTTTACTCATGATTCAGAAATGCACAGAACGACAGTTTCCACCATCTGATGTCGCTCAAGTACTGGATTCTGCTGTCACTAGTTTGCAGCCTTGTTGTCCTCAGAACCTTCCACTATATGCGGAGATACAGAAATGCATGGGAATTATAAGGAGCCAGATACTTGCGCTTATACCCACATAG 3543 42.0 MTRFDGDQPFENRLLKLMAPSRKSRSVNKRFSTANEASSSKYVEDASKSKQKKRKFADLLGPQWSKDEVEQFYEAYRKYGKDWKKVAAAVRNRSTEMVEALFTMNRAYLSLPEGTASVVGLIAMMTDHYSVLRDSESEQESNDDSGAIRKPQKRLRGKSRSNNSKGLDAHFGDASQSQSLPTNYGCLSLLKKRRSGIKPHAVGKRTPRVPVSYSYDKDSREKLFSPSRHNSKAKVDDPNDDDVAHEIALVLTEASQRDGSPQLSQTPNPKIEGHVLSPIQNDRMRSESDMMSMKFRCSEMDEGGCELSLGSTGADNADYDLGKNTREIQRKGKRYYGKKPEVEESMYNHLDDIKEACSGTEEGQKSGSLRGKLETEDLDVKSVRSSFKGPRKRSKKALFGDETSAFDALQTLADLSLMMPDTNAESEPSAKVKEENPDVTDKSKMKGSHPVAGAEISALKTSKTGKAFGNNVGPIPEAEGIQGSNNGNRKRKLKSSPFKISSKDEDNNDSRVNDNLKIKAADEAKSSVGKVKRSPHNAGPAKSGKISKPLDHHSSSSTDHKREDGDYALSTTQVLTNNPTSLPTKLRSRRKMNLGKPQRDSKLADNTSIDQLNITAQSIDDRPHDLKERHSNCLSWHKLRRWCVFEWFYSAIDFPWFAKCEFVEYLNHVGLGHIPRLTRVEWGVIRSSLGRPRRFSAQFLKEEKQKLNQYRESVRKHYSELRAGTREGLPTDLARPLSVGQRVIAIHPKTREIHDGSVLTVDYSRCRVQFDRPELGVEFVMDIECMPLNPVENMPANLSRHGVALDKIFGNLNDAKINGLLKEAKIEDYMKSTSNDKLESTEGSVYISPSTHHINKLIKQAKVDLGCSNLQAKFGLSETVGIQQEASSQPSALAQIQAKEADVHALSELSRALDKKEVVVSELKRLNDEVLENQINGDNLLKDSENFKKQYAAVLLQLNEVNEQVSSALYCLRQRNTYQGTSPLMFLKPVHDLGDPCSHSQEPGSHVAEIVGSSRAKAQTMINEAMQAILALKKGEGNLENIEEAIDFVSNRLSVDDLALPTVRTTAADTSNAAPVSQNHFNACTSNPSSANYVVGPKSNGPSDKTEVEIPSELIAHCVATLLMIQKCTERQFPPSDVAQVLDSAVTSLQPCCPQNLPLYAEIQKCMGIIRSQILALIPT 1180
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5802456 5819375 + CcPI632755_05g007040.1 Cco05g0704 178332

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0704 1180 ProSiteProfiles SANT domain profile. 59 96 IPR017884 -
Cco05g0704 1180 MobiDBLite consensus disorder prediction 198 240 - -
Cco05g0704 1180 MobiDBLite consensus disorder prediction 497 530 - -
Cco05g0704 1180 Coils Coil 1032 1052 - -
Cco05g0704 1180 MobiDBLite consensus disorder prediction 427 445 - -
Cco05g0704 1180 Pfam DIRP 647 748 IPR033471 -
Cco05g0704 1180 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 98 IPR017930 -
Cco05g0704 1180 MobiDBLite consensus disorder prediction 546 564 - -
Cco05g0704 1180 SMART DIRP_2 648 749 IPR033471 -
Cco05g0704 1180 MobiDBLite consensus disorder prediction 214 240 - -
Cco05g0704 1180 MobiDBLite consensus disorder prediction 421 564 - -
Cco05g0704 1180 SUPERFAMILY Homeodomain-like 59 106 IPR009057 -
Cco05g0704 1180 MobiDBLite consensus disorder prediction 133 151 - -
Cco05g0704 1180 Coils Coil 906 929 - -
Cco05g0704 1180 MobiDBLite consensus disorder prediction 162 178 - -
Cco05g0704 1180 Coils Coil 700 720 - -
Cco05g0704 1180 MobiDBLite consensus disorder prediction 133 178 - -
Cco05g0704 1180 MobiDBLite consensus disorder prediction 255 271 - -
Cco05g0704 1180 SMART sant 60 108 IPR001005 -
Cco05g0704 1180 CDD SANT 64 98 IPR001005 -
Cco05g0704 1180 Gene3D - 7 116 - -
Cco05g0704 1180 MobiDBLite consensus disorder prediction 255 274 - -
Cco05g0704 1180 PANTHER LIN-9 18 1180 IPR010561 GO:0000003(PANTHER)|GO:0003677(PANTHER)|GO:0005654(PANTHER)|GO:0006351(InterPro)|GO:0006357(PANTHER)|GO:0017053(InterPro)|GO:0051726(PANTHER)
Cco05g0704 1180 Pfam Myb-like DNA-binding domain 63 98 IPR001005 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0704 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1678 Cco-Chr2:29380101 Cco05g0704 Cco-Chr5:5802456 1.30E-138 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g335 . . . . . Bpe14g01136 . . . . Cma06g01485 Cma14g01632 Car06g01277 Car14g01458 . Cpe08g00199 Cpe03g01374 Bhi01g00974 . . . Hepe05g1463 . . . . . . . . . . . Cone7ag0162 Cone4ag0158 Lsi05g01524 . . Cme06g00712 Blo02g00515 . Bda11g00533 Bda13g00178 . Bpe13g00656 . Bma06g01509 . Cmo06g01480 Cmo14g01669 . . . . . . . . . . . . . Cla05g00634 Cam05g0695 Cec05g0708 Cco05g0704 Clacu05g0690 Cmu05g0657 Cre05g0729 . Csa03g01442 Chy06g00683 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003565 1 5 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 2 1 1 1 1 4 1 2 46
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59248 PF06584 DIRP 1.90E-30 No_clan Cco TF