Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0717 ATGCTTCAAGAAGCTTCAACAAAACCTGAGGGAGAACTTGAAGTTAGCTTTGGTTATAAATGCAATGGTAACAAATATGAAGTTCATGATGTTTCTGACAAGTTCGAGATCCAGCCTGGACTTCCAAGGATCAGCAGTTTCTCTTGCTTATCTGGTGCTGCATTGAGTGCTAATGCTACCCTAGCGAACACAAATATATGCAATGGGTTGATAGGAGAAGAAATTCTGCCGACCTGGGACTCTCCTAACTCCTTCCGTAAGGTTCCCTCATCACCTACTCTTTCAAGGTTGGATATATTGTCAACGTCTCTGCAGAGTAGTCTTTCAAACTTAAGTTGCAGTCCATCTACCCCAACGTCTGAATATGATTCATACTTGTTGAAATCCATGAGTGCTCCATCCGGAAGTGAAGGTTTCCTTAATGTTAAGGAAGTGCAAGTGGCAGGTGGAGCTGCCGGTGAGGACAGGGTTCAAGCTGTTTGTTCTGAAGAAAATGGATGGCTATTTTGTGCAATTTATGATGGTTTTAATGGAAGAGATGCAGCTGATTTTCTTGCTGGCACATTGTACGAAACCATTGTATTTCATTTTAACCTACTAGATTGGGAAGCGAAGAATGAAACCTCCGACCGTATGGATATGGATAATTCACATCTTCTTGATGATAGTAGCATTACTCAAGGAAGATTTTCTCCTTTCGGAAACAATAGTAAAATTGCTTCAGATATCCCCAATTTATTAGAGAACCATTCATATTCCAAAGCAGGAATGACAAACTGTTCTCTAAGGCATGGGGTGTTCGATAGCCTCCAGCGTGCGCTTAGTCAAACAGAGAATGATTTTCTGCACATGGTTGAACAGGAAATGGAGGATCGTCCTGATTTAGTTTCTGTTGGGTCATGTGTTTTAGTTGTTCTTCTTCATGGAAAGGATTTGTACACTCTAAATTTGGGTGATAGTAGAGCAGTACTAGCTACCCTTGATGAGGGTCCTATGAGAGGGAATGGGGGACTGAAAGCTGTCCAGCTCACTGAGAGTCACACTGTGGATAATGAACTTGAAAGAGCACAGTTACAACATGATCATCCTGATGATCCGGCAATCATAGTTGGTGGGAAAGTCAAAGGAAAACTGAAGGTGACTCGTGCATTTGGAGTTGGCTACTTGAAGACGAAAAAATTTAATGATGCTTTGATGGGTATTCTTCGAGTCCGTAACCTAATAAGCCCTCCCTATATTTCCACTCAACCGGCATTGTCTATCCATAGGATATCAAAATCAGATTGCTTTGTTATAGTTGGAAGTGATGGTTTATTTGACTTTTTTGGCAATGAGGAGGCAGTGAACCTTGTCCATTCATATATCTTGAGCAACCCAACTGGCGATCCTGCAAAATTTTTACTGGAGCAGCTCCTATTGAAAGCAGCTGATTGCGCAGGTTTTAGCAAGGAAGAATTAATTACCATTCCAGCCGGCAGGAGAAGGAAATATCATGATGATGTAACTGTTATTGTAATCATCCTTGGAACAAATCAGCGCACCACAAGGGCATCTACTAGCACGGATAGTTTGCTGAAAGATTGA 1584 41.54 MLQEASTKPEGELEVSFGYKCNGNKYEVHDVSDKFEIQPGLPRISSFSCLSGAALSANATLANTNICNGLIGEEILPTWDSPNSFRKVPSSPTLSRLDILSTSLQSSLSNLSCSPSTPTSEYDSYLLKSMSAPSGSEGFLNVKEVQVAGGAAGEDRVQAVCSEENGWLFCAIYDGFNGRDAADFLAGTLYETIVFHFNLLDWEAKNETSDRMDMDNSHLLDDSSITQGRFSPFGNNSKIASDIPNLLENHSYSKAGMTNCSLRHGVFDSLQRALSQTENDFLHMVEQEMEDRPDLVSVGSCVLVVLLHGKDLYTLNLGDSRAVLATLDEGPMRGNGGLKAVQLTESHTVDNELERAQLQHDHPDDPAIIVGGKVKGKLKVTRAFGVGYLKTKKFNDALMGILRVRNLISPPYISTQPALSIHRISKSDCFVIVGSDGLFDFFGNEEAVNLVHSYILSNPTGDPAKFLLEQLLLKAADCAGFSKEELITIPAGRRRKYHDDVTVIVIILGTNQRTTRASTSTDSLLKD 527
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5911379 5914697 - CcPI632755_05g007170.1 Cco05g0717 178345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0717 527 Pfam Protein phosphatase 2C 271 459 IPR001932 -
Cco05g0717 527 SMART PP2C_4 130 506 IPR001932 -
Cco05g0717 527 ProSiteProfiles PPM-type phosphatase domain profile. 139 508 IPR001932 -
Cco05g0717 527 Gene3D - 119 517 IPR036457 -
Cco05g0717 527 SUPERFAMILY PP2C-like 153 509 IPR036457 -
Cco05g0717 527 CDD PP2Cc 152 508 IPR001932 -
Cco05g0717 527 PANTHER PROTEIN PHOSPHATASE 2C 148 506 IPR015655 GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0006470(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2155 Cco-Chr2:34306865 Cco05g0717 Cco-Chr5:5911379 1.50E-62 dispersed
Cco05g0717 Cco-Chr5:5911379 Cco10g0188 Cco-Chr10:1823425 3.30E-59 dispersed
Cco05g0717 Cco-Chr5:5911379 Cco04g1007 Cco-Chr4:25693211 8.50E-63 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0717 - - - 0.0