Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0727 ATGCATATGGAAACCCAATATTCTGCTTCGCATTCCTACGGTTCGGCGATGAAGATGACAATTCCGCCGTCTCAACATGCCGACAATGACCGGAGCACCACCGAGCTTCGCGCCTTGGACTGCAACCTCACCTCCCTTTGCGACCACATTCAGATTGAGGGGTTTAACTCTGGCGCATTCTCTGACATCGTTGTCCATGCCATGGGCTCCACGTACCACCTCCATCGCTTAATTCTATCGCGCAGCTCTTACTTCAGGAATATGCTTCATGGGCCGTGGAAAGAAGCCAGTGCTCCTGTTCTGACCTTGCACGTTGATGATAAGAATGTTAATGGGGAGGCAATTGCAATGGCTTTAGCATATCTGTATGGACATCATCCTAAGTTGAATGATAATAATGCGTTTCGTGTTCTTGCTGCTGCTTCTTTTCTCGACCTTCAGGATTTGTGTGCAATATGCACAGATTTTATCATAGCTGAACTGTGGACTTCAAATTTCTTGGCTTATCAGGTATTTGCGGAGAGCCAAGATTATGGAATACATGGAGAACGTGTGAGAATTGCTTGCTGGGGTTACCTATGTCAAAGTGGTGCCATTGAGTTGAAAGAGGTGCTTCCAAAGCTTTCATCTCAGACATTGTATGCTTTGCTGACCTCTGATGAATTATGGGTGCCTAGCGAAGAAAGACGGTTTGAACTGGCATTGTATGCGTTCCTTGCTAAAGGGGCTCTTTGCAAGGAGGAACCTTCTGAACCAGGTTGTTCCAGTTCTGAGACTGAGGATTCCAAGGCACCAGAAAATTGTTCAATAGATTCCACTAATGAAAGGTTGGAATCTGAACTTGGACATTTAAGTTTGAAAGATGGCCTAGAGGTCCATAAAAGTGCTCATAATCATCTTAGTCAGCTTCCGGACTGTGTGGTTAACTTCCAAACAGGGGCCTCCAACTCTAAACAGAAGATGCAACAAGTTACATATTCTCAGTCAAATTTAAAACCACCATTTTTGTGCAATGTGGAAGGGTCATCAACTTTAAATAATTCATTCTCTGATATGAATGGAATTCTAAACTCGTGTTCCTATATTAACTTGCCAATTACAGTTGGAGTAAGTGGACTTGGTGCAAGTGGAGTTGCAATGGAAGGGCCATCAGAAGAAGGCTGCTATCAATTGGATAACAATACTTGGCTTGCCACGGACCAAACAAGCCATTGTTCCACTGCAAACTCTTCTACCAATGAACTCCCTTTAAATGATTGGGGAAGATGTGGCATGCCTGCTGTTTCATGGGGTGGCAGGGTTGTAGGTAGAAGGCAACTTAAAAGTTATGCTAAAGGCCACTTAGGTGCAAGGGGAGAGGATTATGATGTGTTTGATAGTCTATTTGAAGGGGGTTCACTTTTGTACTGCAACATGACTTTTGAAGCTCTTCTAAACATGAGAAAACAACTTGAGGAGTTGGGTTTCCCTTGCAAAGCTGTAAATGATGGTCTTTGGCTGCAGATGCTTTTAAGGCAAAGAGTACAAGAGATTGTTGCTGATACATGCAAAAATTGCTGCTTTACAAGTTTAGCATGTGCATGCCGACAGCCATTTGCATTTGCACGTGGAGTCAATGCCTCAGGATACTATATCAATGAGCATGATCAGAACAGTTCTCCTGGCAGTGTGGGAAACATATATGTTTCAGAATCTTCTCAAGGTGACGGAAATGGCCCATTCAAACCTGTCCGAGTTCATGTTGTTGAAGGGCTTGCTGGAATTGGACGTGGAGCCACTTTTGTGCCCATGAGTGCTTGGCCTCCAACACGCTTTGTCTCCCGTGTACCTATTGGTGTGGGCAACAGAAATTGTCATCAGTCACTGGCTAATGATGATTCAGAGGCTAGAGCTGAGCACAGTGGCGACTTGTCTGGAGATGGATTGACTGCATTGGTTGGTTTGAGCCAAGGAGGGGGCGGCAGTATGAATGCTCAGGGAGAACCAACAGAGAGAGGATATGAGATAGAACTGCAGAGCCGAATATCTGCCTGTATGGCAGGTCCAAGTGCCACTGGTATTCCTGTTCAGATGCTTCAATCTTCAGATCATGCCCTTGGAATTGAGTGGGAGAATGAAAACAGTACAATTGCATTGGATATGAAAACACCTTTAAGCCACTTCCCTCCTTTTCGCTTTGGCGTGCAATTTGAGGACGTTCATAGGCTTAATGATGGCCAAGTCAAGCATTCACCTGAGTTTTTCTATGCTGGTTCTTTATGGAAGGTTAGCGCTCAGGCGTTCAATGACGAAGACCCTCAAGGACGTCGAACTCTAGGATTATTTCTTCACAGGCGGAAGGCAGAAATATCTGATTCTCTCAGAAAGGTCCATATGTTTGTCGATTCTCGGGAAAAAGTTACTGCAAGATATCAGTTGATATGTCCATCAAAGAGGGAAGTGATGGTGTTTGGCAACTTCAAACAAACAGGAACTCTTCTACCGAAAGCTCCTAAGGGATGGGGTTGGCGCACAGCTCTCCTATTCGACGAGCTTGCGGATTTTCTTCAACACGGAGCTCTGAGGGTGGCTGCTGTTGTGCAGCTTGTTTGA 2592 44.95 MHMETQYSASHSYGSAMKMTIPPSQHADNDRSTTELRALDCNLTSLCDHIQIEGFNSGAFSDIVVHAMGSTYHLHRLILSRSSYFRNMLHGPWKEASAPVLTLHVDDKNVNGEAIAMALAYLYGHHPKLNDNNAFRVLAAASFLDLQDLCAICTDFIIAELWTSNFLAYQVFAESQDYGIHGERVRIACWGYLCQSGAIELKEVLPKLSSQTLYALLTSDELWVPSEERRFELALYAFLAKGALCKEEPSEPGCSSSETEDSKAPENCSIDSTNERLESELGHLSLKDGLEVHKSAHNHLSQLPDCVVNFQTGASNSKQKMQQVTYSQSNLKPPFLCNVEGSSTLNNSFSDMNGILNSCSYINLPITVGVSGLGASGVAMEGPSEEGCYQLDNNTWLATDQTSHCSTANSSTNELPLNDWGRCGMPAVSWGGRVVGRRQLKSYAKGHLGARGEDYDVFDSLFEGGSLLYCNMTFEALLNMRKQLEELGFPCKAVNDGLWLQMLLRQRVQEIVADTCKNCCFTSLACACRQPFAFARGVNASGYYINEHDQNSSPGSVGNIYVSESSQGDGNGPFKPVRVHVVEGLAGIGRGATFVPMSAWPPTRFVSRVPIGVGNRNCHQSLANDDSEARAEHSGDLSGDGLTALVGLSQGGGGSMNAQGEPTERGYEIELQSRISACMAGPSATGIPVQMLQSSDHALGIEWENENSTIALDMKTPLSHFPPFRFGVQFEDVHRLNDGQVKHSPEFFYAGSLWKVSAQAFNDEDPQGRRTLGLFLHRRKAEISDSLRKVHMFVDSREKVTARYQLICPSKREVMVFGNFKQTGTLLPKAPKGWGWRTALLFDELADFLQHGALRVAAVVQLV 863
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5970658 5975810 + CcPI632755_05g007270.1 Cco05g0727 178355

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0727 863 Gene3D Potassium Channel Kv1.1; Chain A 28 193 IPR011333 -
Cco05g0727 863 ProSiteProfiles MATH/TRAF domain profile. 723 860 IPR002083 GO:0005515(InterPro)
Cco05g0727 863 SMART BTB_4 61 161 IPR000210 GO:0005515(InterPro)
Cco05g0727 863 MobiDBLite consensus disorder prediction 250 269 - -
Cco05g0727 863 PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN 8 863 - -
Cco05g0727 863 ProSiteProfiles BTB domain profile. 61 131 IPR000210 GO:0005515(InterPro)
Cco05g0727 863 Pfam BTB/POZ domain 55 159 IPR000210 GO:0005515(InterPro)
Cco05g0727 863 SUPERFAMILY POZ domain 55 158 IPR011333 -
Cco05g0727 863 MobiDBLite consensus disorder prediction 255 269 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0727 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g300 . . . . . . . . . . Cma06g01502 . Car06g01293 . . . . . . . . . . . . . . . . . . . . . . Lsi05g01544 . . Cme06g00736 . Blo07g00171 Bda11g00523 . . Bpe13g00667 . . . Cmo06g01500 . . . . . . . . . . . . . . Cla05g00656 Cam05g0717 Cec05g0728 Cco05g0727 Clacu05g0712 Cmu05g0677 Cre05g0751 . Csa03g01470 Chy06g00708 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010984 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 31
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59249 PF00651 BTB 3.30E-14 CL0033 Cco TR