Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0738 ATGGCAACGGCGTACGCAAATCTTCTGAATATCGGAACCAAGATCATCGCCGTCGGCCGGAACTACGCCGCCCATGCCAAAGAACTCGGCAACGCCGTCCCCAAGGAGCCTGTGTTGTTTATGAAACCCACCTCGTCTTACTTGCAAAATGGAGGGACGATCGAGATTCCTCACCCTCTGAAGTCTTTGGATCACGAGGTTGAGCTCGCCGTCGTAATCTCCCAGAGAGCTCGTGATGTTCCTGAAGCCTCCGCCATGGATTATGTTGGGGGTTATGCTCTTGCACTGGACATGACTGCCCGAGAAATCCAAGCTTCTGCAAAGTCTGCAGGCCTTCCATGGACAGTAGCTAAAGGGCAGGACACCTTTACACCCATCAGTTCTGTTCTGTCCAAGGCATCAATCCCTGATCCGGATGATTTAGAATTATGGTTAAAGGTAGACGATGAATTTCGACAGAAGGGCTCAACCAAGGATATGATCTTTAAAATCCCGTACCTTATTAGCCACATAAGTTCGCTCATGACCCTTCTTGAAGGAGATGTGATACTAACAGGAACTCCCTCAGGCGTTGGCCCAGTGAAGGCAGGTCAGAAGGTGACAGCAGGGATAACAAATATCATAGACGTTCACTTCAATGTCGAAAATCGGAGGAAACCATAA 663 49.17 MATAYANLLNIGTKIIAVGRNYAAHAKELGNAVPKEPVLFMKPTSSYLQNGGTIEIPHPLKSLDHEVELAVVISQRARDVPEASAMDYVGGYALALDMTAREIQASAKSAGLPWTVAKGQDTFTPISSVLSKASIPDPDDLELWLKVDDEFRQKGSTKDMIFKIPYLISHISSLMTLLEGDVILTGTPSGVGPVKAGQKVTAGITNIIDVHFNVENRRKP 220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6065136 6067608 + CcPI632755_05g007380.1 Cco05g0738 178366

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0738 220 Gene3D - 2 217 IPR036663 GO:0003824(InterPro)
Cco05g0738 220 FunFam Fumarylacetoacetate hydrolase domain-containing 1 1 218 - -
Cco05g0738 220 SUPERFAMILY FAH 13 215 IPR036663 GO:0003824(InterPro)
Cco05g0738 220 Pfam Fumarylacetoacetate (FAA) hydrolase family 14 211 IPR011234 GO:0003824(InterPro)
Cco05g0738 220 PANTHER ACYLPYRUVASE 12 218 - GO:0005739(PANTHER)|GO:0018773(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0738 K01557 - - csv:101207065 427.557
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g161 . . . . . . . . . . . Cma14g01612 . Car14g01431 . . Cpe03g01354 . . . . . . . . . . . . . . Cone14ag0751 Cone15ag0758 . . . . . . . Blo07g00169 Bda11g00520 . . Bpe13g00670 . Bma06g01495 . . Cmo14g01650 . . . . . . . . . . . . . Cla05g00667 Cam05g0731 Cec05g0739 Cco05g0738 Clacu05g0724 Cmu05g0689 Cre05g0763 . Csa03g01484 Chy06g00721 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010280 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 32