Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0741 ATGTCTGATGATGGAGGGAAGAACAAGAAAGCTGCTCTCATCGGCGTATCTTCCTTGTTTCTTGTTGCCATGGTAGTTGCTGTGGCAGTCGGTGTCAATCGCAAAGACTCCGACATCGCTGGTGGCGGCGGTGCCACGGCGGAGATCTCCACCTCCACCAAAGCCATTAAGGCTCTCTGTCAGCCCACCGATTACCAAGAAACCTGCGAGACAGCCCTGTCCCAAGCCGGGACCAACACAAGCGACCCACGTGAGCTAATCAAAGCCGGATTCCATGTCGCCGTCGACCAAATCAAATGGGCCATCGGAAATTCCTCCACCTTGAAAGATTCCGCCAGTGATCCCATGGCTAAACAAGCTCTTGACGCTTGTGGCGAGCTAATGGATTACGCAATTGACGATCTCTTAATTTCCTTTGACAGAATCACAGACAATTTCGATATCCAGAAAATTGATGATTACATTGAGGATCTTAAGGTTTGGTTGAGTGGCGCATTGACTTATCAAGAAACTTGCTTGGATGGATTCGAAAATGTCACCGGAGATACAGGGGAAAAGATGAAGAATTTGTTGAAAATGTCAAAAGAATTGACAGCTAATGGGCTTGGAATGGTTAGTGAAGTTACTTCCATTATGACCTCTTTTGGGCTTCCATCGGCTGGACGAAGGCTGTTGGAGGAATCCGATGAACAAGAGAAAGAGCCGTCGTGGGTTAGTGACAGACGTGGCCTACTTCAAGCCACCGGCGCCACCATCAAGGCAGATGTTGTGGTGGCGAAAGATGGAAGTGGAAAGTACAAAACGGTGAGTGAAGCCTTAAATGATGTCCCAAAGAAGAGCAATAAAACGTTTGTGATTTATGTTAAGGCCGGAGTTTATCAAGAACAAGTAATGGTAGAAAAAAGTATGACTTGGGTAATGATGATCGGAGATGGGCCGACTAAAACCAAGATCACCGCCGGCAAGAACTTCATTGACGGAACACCCACCTTCAAAACCGCAACTGTTGCGGTGATTGGAACCAACTTCATTGCGAAGGACATGGGGTTCGAGAACTCTGCCGGACCAGAGAAGCACCAAGCAGTGGCACTCCGAGTTCAATCTGACATGTCAATCTTCTACAATTGTCAAATGGACGGTTACCAAGACACTCTCTACACTCACGCTCACCGTCAATTCTACCGAGACTGCACCATTACCGGCACCATCGATTTCATCTTCGGCAACGGCGCCGTCGTCTTCCAGAACTGCAAGATCCTCGTGAGGAAGCCAATGGAGAATCAACAATGCATCGTCACCGCACAAGGTCGAACTCAACGAAAGGAGCCCACCGCCATAATCTTGCAGAATTGTGTCATCTCCTCTGACCCTGACTTCTTCCCCGTCCGCCACATCCACAAAGCCTACCTCGGTCGTCCGTGGAAGCAATATTCAAGAACCATCATCATGCAGTCCCAAATTGATGATTTGATCCAACCTGAAGGCTGGCTCCCATGGATGGGCGATTTTGCTCTCAACACTCTGTTTTACACAGAGTACAATAACAGAGGACCTGGCGCCGCAAAGGATAAGCGAGTTAAGTGGAGGGGAATTAAGCAGATCACGCCGGAGCACGCCATCGATTTCACCGCTGGGAGATTTATTCGCGGTGATCCATGGATCAAGCCCACTGGAGTTCCGTACACTTCCGGCATGATGGCAGTATAA 1707 48.86 MSDDGGKNKKAALIGVSSLFLVAMVVAVAVGVNRKDSDIAGGGGATAEISTSTKAIKALCQPTDYQETCETALSQAGTNTSDPRELIKAGFHVAVDQIKWAIGNSSTLKDSASDPMAKQALDACGELMDYAIDDLLISFDRITDNFDIQKIDDYIEDLKVWLSGALTYQETCLDGFENVTGDTGEKMKNLLKMSKELTANGLGMVSEVTSIMTSFGLPSAGRRLLEESDEQEKEPSWVSDRRGLLQATGATIKADVVVAKDGSGKYKTVSEALNDVPKKSNKTFVIYVKAGVYQEQVMVEKSMTWVMMIGDGPTKTKITAGKNFIDGTPTFKTATVAVIGTNFIAKDMGFENSAGPEKHQAVALRVQSDMSIFYNCQMDGYQDTLYTHAHRQFYRDCTITGTIDFIFGNGAVVFQNCKILVRKPMENQQCIVTAQGRTQRKEPTAIILQNCVISSDPDFFPVRHIHKAYLGRPWKQYSRTIIMQSQIDDLIQPEGWLPWMGDFALNTLFYTEYNNRGPGAAKDKRVKWRGIKQITPEHAIDFTAGRFIRGDPWIKPTGVPYTSGMMAV 568
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6085978 6087773 - CcPI632755_05g007410.1 Cco05g0741 178369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0741 568 Pfam Pectinesterase 255 551 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cco05g0741 568 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 54 208 IPR035513 -
Cco05g0741 568 SUPERFAMILY Pectin lyase-like 250 564 IPR011050 -
Cco05g0741 568 Pfam Plant invertase/pectin methylesterase inhibitor 54 202 IPR006501 GO:0004857(InterPro)
Cco05g0741 568 NCBIfam pectinesterase inhibitor domain 51 203 IPR006501 GO:0004857(InterPro)
Cco05g0741 568 FunFam Pectinesterase 249 565 - -
Cco05g0741 568 CDD PMEI-like_3 58 210 - -
Cco05g0741 568 Gene3D - 249 565 IPR012334 -
Cco05g0741 568 ProSitePatterns Pectinesterase signature 2. 399 408 IPR033131 -
Cco05g0741 568 ProSitePatterns Pectinesterase signature 1. 280 299 IPR018040 -
Cco05g0741 568 Gene3D Invertase/pectin methylesterase inhibitor family protein 50 208 IPR035513 -
Cco05g0741 568 FunFam Pectinesterase 52 209 - -
Cco05g0741 568 PANTHER PECTINESTERASE 10 556 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cco05g0741 568 SMART PMEI_2 51 204 IPR006501 GO:0004857(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0741 Cco-Chr5:6085978 Cco11g0021 Cco-Chr11:278329 4.80E-136 dispersed
Cco01g1833 Cco-Chr1:30910978 Cco05g0741 Cco-Chr5:6085978 2.10E-08 transposed
Cco03g0828 Cco-Chr3:9151583 Cco05g0741 Cco-Chr5:6085978 3.40E-118 transposed
Cco03g1799 Cco-Chr3:32636494 Cco05g0741 Cco-Chr5:6085978 1.20E-198 wgd
Cco05g0741 Cco-Chr5:6085978 Cco06g0497 Cco-Chr6:5453474 1.00E-202 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0741 K01051 - csv:101212686 1009.21