Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0746 ATGCACCAAAGAGAGCTCAGATTCAGGAGACTCTTTGGAACCCTGCTCTGCTCTGCCGTCCCACTCATTTCCGCCGCACCTTCTGCTGCCGTCGCCGGATCTAGATTCTGCTCTCCGTTCGCTTCCCCAATCCTTGATCTCTTCCGCTTAGTCATGAATTCTAATTTCGGGAAGAATTTCGAGTTTGATTTGGGACTCGGATCCTCTCGCTCCATATCTCTCAACGATCAGAAAAACAAAACCCCATCATATTCTTCCTACGCTTCCTCTGGTTCGTCGTACTCTTCGACACAGACGAGGCCGGCCTGGCAGCCTAACAAGCCCTCATGGACGCATCAGCCTGCGCCGAATCAGGTGGCGCGCCCTAACTTGTCCAATTCCTCCGCTTCCATGGTTGGTGATATATTTGGGAAGACCTGGGGTTCCACGGCGAATTCCATTTCCACTGCGGGCATCGGAATTGTTGAAAAGAATCCGAATCTGTTCAGCGATTTGGTAGGTTCTGCCTTGGGATCGGGTAAGAGCAATTCAAATGCTCCATTGAAGAATGCGCCTCCGGCTTCGGTGTCGTCGACTTCCGCATTGAATAGAAATTCGTTTTCGATGGGAAATATGACCGATTCGTTGCCTAAATCCAGTAGTAATCCGGGTAAAAATAGTGGAAATTGGAGTTTTGAGAATCTTAGCAGTTCCAATAGTCGGAATAGTAATCAGAGTAATGCCACCAATATCAAGACTCCCAATTTCGGAGGTCCAAGCATGAGATCAACCATTGGCAGTGGTAAGACGAGCTCTAGCAAGGATCCCTTTGGTTCTTTAGTTGATTTTGGATCTAAATCATCTGGGAATTTGAATTCCACAAGTAAGAGTCAAAATATCAATTCAAGTGAGGACTCTTTTGGGGATTTCCAGAATGCTTCAAATCCAACCACTACAGCATTTCCTTCAAGCAGATCGAATGGGAGTGGTGTTGATTTCAAGGGATCAAGTTTTAATCCTGGCATAAATATGGGTGATTTTGGAATGCCCTCAATGGATTTTGGTTCCAAGGTTCAAGATACTGTTCAAACCACTGCCAGTGATCCACTTGATATGTTGTTTAGCTCATCCAAAGCCCCACCTGGAGGTGCTCCAGTGGCATCTGTCACGGCTGGAGCGTCGCAATCCTTGGATGCCGATGATTGGGGATTGGATTCAGAGTTTGGGGGAGGTGGTCATGATGTGGGTGGTGGTTCAACAACTGAGATCGAAGGACTTCCACCTCCTCCCGCAGGGGTGACAGCTTCTTTGGCAAAGAACAAGGGAGTCGATGTCTACAAGCAGGGACAATACGCCGATGCTATTAAGTGGCTTTCTTGGGCCGTGATTCTTTTTGAGAAAGCCGGTGACAATGTTGCCATAATTGAAGTTTTGTCCACACGAGCTTCATGCTACAAAGAAGTTGGGGAATATAAAAAAGCTGTGGTTGATTGTACGAAGGTATTGGATCAGGATGATGCAAATGTGAATGTTCTCGTCCAACGTGCACTTCTGTATGAAAGTATGGAGAAGTACAGACTTGGAGCCGAAGACCTGAGGGCTGTCCTGAAGATCGATCCGGGTAACAGAGTTGCAAGAAGCACAATTCACCGGTTGACTAAGTTGGCAGACTAA 1653 47.07 MHQRELRFRRLFGTLLCSAVPLISAAPSAAVAGSRFCSPFASPILDLFRLVMNSNFGKNFEFDLGLGSSRSISLNDQKNKTPSYSSYASSGSSYSSTQTRPAWQPNKPSWTHQPAPNQVARPNLSNSSASMVGDIFGKTWGSTANSISTAGIGIVEKNPNLFSDLVGSALGSGKSNSNAPLKNAPPASVSSTSALNRNSFSMGNMTDSLPKSSSNPGKNSGNWSFENLSSSNSRNSNQSNATNIKTPNFGGPSMRSTIGSGKTSSSKDPFGSLVDFGSKSSGNLNSTSKSQNINSSEDSFGDFQNASNPTTTAFPSSRSNGSGVDFKGSSFNPGINMGDFGMPSMDFGSKVQDTVQTTASDPLDMLFSSSKAPPGGAPVASVTAGASQSLDADDWGLDSEFGGGGHDVGGGSTTEIEGLPPPPAGVTASLAKNKGVDVYKQGQYADAIKWLSWAVILFEKAGDNVAIIEVLSTRASCYKEVGEYKKAVVDCTKVLDQDDANVNVLVQRALLYESMEKYRLGAEDLRAVLKIDPGNRVARSTIHRLTKLAD 550
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6117046 6119578 + CcPI632755_05g007460.1 Cco05g0746 178374

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0746 550 SUPERFAMILY TPR-like 430 542 IPR011990 GO:0005515(InterPro)
Cco05g0746 550 MobiDBLite consensus disorder prediction 174 327 - -
Cco05g0746 550 MobiDBLite consensus disorder prediction 400 423 - -
Cco05g0746 550 MobiDBLite consensus disorder prediction 76 126 - -
Cco05g0746 550 PANTHER OS03G0340700 PROTEIN 58 550 - -
Cco05g0746 550 Gene3D Tetratricopeptide repeat domain 426 550 IPR011990 GO:0005515(InterPro)
Cco05g0746 550 SMART tpr_5 428 461 IPR019734 GO:0005515(InterPro)
Cco05g0746 550 SMART tpr_5 502 535 IPR019734 GO:0005515(InterPro)
Cco05g0746 550 SMART tpr_5 468 501 IPR019734 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0746 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g149 . . . . . Bpe14g01113 . . . . Cma06g01540 Cma14g01608 . Car14g01427 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo14g01644 . . . . . . . . . . . . . Cla05g00673 . . Cco05g0746 . . . . . Chy06g00728 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008564 1 1 0 1 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 34