Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0755 ATGATGATGGATCCGAGTGACAGAGGATCGGAATCGGAGGACATGTCTGGGAAGAACTCCAGTGGGGTTTCGTCGGAGGAGAGTCAAGTGAATGAGCAGAACAAGAAGACTTGTGCCGACTGTGGTACTTCGAAAACTCCTTTATGGAGAGGCGGTCCCGCTGGTCCAAAGTCTCTTTGCAATGCGTGTGGGATCAGAAGTAGGAAGAAGAGAAGAGCGATTTTAGGGTTGAGCAAAGGGGTTGTTGAAGATAAGAAGAGCAAAAAGAGCAGTAATATTAGCAATAGTAAGTTGAGAGATAGTTTGAAACAAAGGCTTTTGGCTTTGGGTAGAGAAGTTTTGATGCAGAGATCTACTGTTGAAAGGCAAAGGAAGAAGTTAGGAGAAGAAGAACAAGCTGCTGTGCTTTTGATGGCTTTATCCTATGGCTCTGTTTATGCTTGA 444 44.59 MMMDPSDRGSESEDMSGKNSSGVSSEESQVNEQNKKTCADCGTSKTPLWRGGPAGPKSLCNACGIRSRKKRRAILGLSKGVVEDKKSKKSSNISNSKLRDSLKQRLLALGREVLMQRSTVERQRKKLGEEEQAAVLLMALSYGSVYA 147
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6216242 6216859 - CcPI632755_05g007550.1 Cco05g0755 178383

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0755 147 CDD ZnF_GATA 37 72 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cco05g0755 147 MobiDBLite consensus disorder prediction 1 53 - -
Cco05g0755 147 Pfam GATA zinc finger 38 72 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cco05g0755 147 MobiDBLite consensus disorder prediction 15 41 - -
Cco05g0755 147 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 31 71 - -
Cco05g0755 147 Gene3D - 32 131 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Cco05g0755 147 SMART GATA_3 32 92 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cco05g0755 147 ProSitePatterns GATA-type zinc finger domain. 38 63 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cco05g0755 147 ProSiteProfiles GATA-type zinc finger domain profile. 32 68 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cco05g0755 147 PANTHER OS01G0976800 PROTEIN 17 147 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0755 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1616 Cco-Chr3:30844017 Cco05g0755 Cco-Chr5:6216242 1.70E-13 dispersed
Cco05g0755 Cco-Chr5:6216242 Cco05g2025 Cco-Chr5:29339626 1.10E-12 dispersed
Cco03g1815 Cco-Chr3:32794791 Cco05g0755 Cco-Chr5:6216242 2.70E-07 wgd
Cco05g0755 Cco-Chr5:6216242 Cco06g0477 Cco-Chr6:5270885 3.20E-36 wgd
Cco05g0755 Cco-Chr5:6216242 Cco09g0522 Cco-Chr9:4591355 8.30E-16 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g110 Blo01g00058 . . Bda08g00307 Bpe04g01105 Bpe14g01108 Bma04g01139 . . Cmo17g00342 Cma06g01551 Cma14g01600 Car06g01316 Car14g01415 Sed02g1148 Cpe08g00163 Cpe03g01341 Bhi01g01062 Tan10g1053 Cmetu06g2475 Lac11g0907 Hepe05g1401 . . Cla06g00446 Cam06g0474 Cec06g0479 Cco06g0477 Clacu06g0460 Cmu06g0461 Cre06g1236 . . . . . . Chy11g01548 Cme06g00767 Blo02g00487 . Bda11g00513 Bda13g00207 Bpe05g00821 Bpe13g00684 . Bma06g01481 Sed09g0269 . Cmo14g01633 . Cma17g00353 . Car17g00324 Cpe12g00302 . Bhi12g01901 Tan06g2729 Cmetu11g0446 Lac11g0907 Hepe03g0066 . Lcy12g0779 Cla05g00682 Cam05g0749 Cec05g0755 Cco05g0755 Clacu05g0741 Cmu05g0706 Cre05g0780 Lsi09g01468 Csa03g01500 Chy06g00738 Cme11g02058
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco08g1367 . 89 355 C2C2-Gata Transcription Factor Family AT5G25830 54.3 7.2e-68 254.6
Cco05g0755 . 2 147 C2C2-Gata Transcription Factor Family AT3G06740 62.3 8.7e-37 150.2
Cco04g1769 . 109 285 C2C2-Gata Transcription Factor Family AT4G36240 50.3 2.4e-41 166.0
Cco10g0230 . 1 515 C2C2-Gata Transcription Factor Family AT4G17570 53.5 6.4e-140 494.6
Cco09g1334 . 1 517 C2C2-Gata Transcription Factor Family AT4G17570 52.1 9.6e-136 480.7
Cco10g0230 . 1 515 C2C2-Gata Transcription Factor Family AT5G47140 50.9 1.8e-120 429.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001736 5 2 2 2 4 2 3 2 2 2 2 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 4 2 1 68
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59252 PF00320 GATA 8.70E-17 CL0167 Cco TF