Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0755 ATGATGATGGATCCGAGTGACAGAGGATCGGAATCGGAGGACATGTCTGGGAAGAACTCCAGTGGGGTTTCGTCGGAGGAGAGTCAAGTGAATGAGCAGAACAAGAAGACTTGTGCCGACTGTGGTACTTCGAAAACTCCTTTATGGAGAGGCGGTCCCGCTGGTCCAAAGTCTCTTTGCAATGCGTGTGGGATCAGAAGTAGGAAGAAGAGAAGAGCGATTTTAGGGTTGAGCAAAGGGGTTGTTGAAGATAAGAAGAGCAAAAAGAGCAGTAATATTAGCAATAGTAAGTTGAGAGATAGTTTGAAACAAAGGCTTTTGGCTTTGGGTAGAGAAGTTTTGATGCAGAGATCTACTGTTGAAAGGCAAAGGAAGAAGTTAGGAGAAGAAGAACAAGCTGCTGTGCTTTTGATGGCTTTATCCTATGGCTCTGTTTATGCTTGA 444 44.59 MMMDPSDRGSESEDMSGKNSSGVSSEESQVNEQNKKTCADCGTSKTPLWRGGPAGPKSLCNACGIRSRKKRRAILGLSKGVVEDKKSKKSSNISNSKLRDSLKQRLLALGREVLMQRSTVERQRKKLGEEEQAAVLLMALSYGSVYA 147
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6216242 6216859 - CcPI632755_05g007550.1 Cco05g0755 178383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0755 147 CDD ZnF_GATA 37 72 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cco05g0755 147 MobiDBLite consensus disorder prediction 1 53 - -
Cco05g0755 147 Pfam GATA zinc finger 38 72 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cco05g0755 147 MobiDBLite consensus disorder prediction 15 41 - -
Cco05g0755 147 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 31 71 - -
Cco05g0755 147 Gene3D - 32 131 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Cco05g0755 147 SMART GATA_3 32 92 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cco05g0755 147 ProSitePatterns GATA-type zinc finger domain. 38 63 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cco05g0755 147 ProSiteProfiles GATA-type zinc finger domain profile. 32 68 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cco05g0755 147 PANTHER OS01G0976800 PROTEIN 17 147 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1616 Cco-Chr3:30844017 Cco05g0755 Cco-Chr5:6216242 1.70E-13 dispersed
Cco05g0755 Cco-Chr5:6216242 Cco05g2025 Cco-Chr5:29339626 1.10E-12 dispersed
Cco03g1815 Cco-Chr3:32794791 Cco05g0755 Cco-Chr5:6216242 2.70E-07 wgd
Cco05g0755 Cco-Chr5:6216242 Cco06g0477 Cco-Chr6:5270885 3.20E-36 wgd
Cco05g0755 Cco-Chr5:6216242 Cco09g0522 Cco-Chr9:4591355 8.30E-16 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59252 PF00320 GATA 8.70E-17 CL0167 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0755 - - - 0.0