Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco05g0755 | ATGATGATGGATCCGAGTGACAGAGGATCGGAATCGGAGGACATGTCTGGGAAGAACTCCAGTGGGGTTTCGTCGGAGGAGAGTCAAGTGAATGAGCAGAACAAGAAGACTTGTGCCGACTGTGGTACTTCGAAAACTCCTTTATGGAGAGGCGGTCCCGCTGGTCCAAAGTCTCTTTGCAATGCGTGTGGGATCAGAAGTAGGAAGAAGAGAAGAGCGATTTTAGGGTTGAGCAAAGGGGTTGTTGAAGATAAGAAGAGCAAAAAGAGCAGTAATATTAGCAATAGTAAGTTGAGAGATAGTTTGAAACAAAGGCTTTTGGCTTTGGGTAGAGAAGTTTTGATGCAGAGATCTACTGTTGAAAGGCAAAGGAAGAAGTTAGGAGAAGAAGAACAAGCTGCTGTGCTTTTGATGGCTTTATCCTATGGCTCTGTTTATGCTTGA | 444 | 44.59 | MMMDPSDRGSESEDMSGKNSSGVSSEESQVNEQNKKTCADCGTSKTPLWRGGPAGPKSLCNACGIRSRKKRRAILGLSKGVVEDKKSKKSSNISNSKLRDSLKQRLLALGREVLMQRSTVERQRKKLGEEEQAAVLLMALSYGSVYA | 147 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 6216242 | 6216859 | - | CcPI632755_05g007550.1 | Cco05g0755 | 178383 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco05g0755 | 147 | CDD | ZnF_GATA | 37 | 72 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco05g0755 | 147 | MobiDBLite | consensus disorder prediction | 1 | 53 | - | - | |
Cco05g0755 | 147 | Pfam | GATA zinc finger | 38 | 72 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco05g0755 | 147 | MobiDBLite | consensus disorder prediction | 15 | 41 | - | - | |
Cco05g0755 | 147 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 31 | 71 | - | - | |
Cco05g0755 | 147 | Gene3D | - | 32 | 131 | IPR013088 | GO:0006355(InterPro)|GO:0008270(InterPro) | |
Cco05g0755 | 147 | SMART | GATA_3 | 32 | 92 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco05g0755 | 147 | ProSitePatterns | GATA-type zinc finger domain. | 38 | 63 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco05g0755 | 147 | ProSiteProfiles | GATA-type zinc finger domain profile. | 32 | 68 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco05g0755 | 147 | PANTHER | OS01G0976800 PROTEIN | 17 | 147 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco03g1616 | Cco-Chr3:30844017 | Cco05g0755 | Cco-Chr5:6216242 | 1.70E-13 | dispersed | |
Cco05g0755 | Cco-Chr5:6216242 | Cco05g2025 | Cco-Chr5:29339626 | 1.10E-12 | dispersed | |
Cco03g1815 | Cco-Chr3:32794791 | Cco05g0755 | Cco-Chr5:6216242 | 2.70E-07 | wgd | |
Cco05g0755 | Cco-Chr5:6216242 | Cco06g0477 | Cco-Chr6:5270885 | 3.20E-36 | wgd | |
Cco05g0755 | Cco-Chr5:6216242 | Cco09g0522 | Cco-Chr9:4591355 | 8.30E-16 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59252 | PF00320 | GATA | 8.70E-17 | CL0167 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco05g0755 | - | - | - | 0.0 |