Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco05g0778 ATGGATGCACAACTCGATAACTTTGCAAATACCAGACAAGATATCATCTCCATGATTGGCCTTCCTGCTGCCATAGATTTGCTTAGAACTTCCATTTTCTCCATAACCATTGGCTCAAATGACTTCATTAATAACTATTTTACACCAGCCTTCTCTGATTCAGGACACCGGTTGATTCCTCCAGAGTTGTTTGTTGGCTCCATGATTTCAAGATACAGACTCCAACTCACAAGACTCTACAATCTAGGAGCCAGAAAGATCATAGTGGTGAACGTCGGACCAATCGGATGCATTCCATATCAGAGAGATTCAAATCCTTCATTAGGAAATAACTGTGCAAATTCCCCTAACCTAATGGCTCAGTTATTCAACAACCAATTGAGAGGTCTACTCACAGAGCTCGGTGCACGATTTCAGGATTCGAATTTCCTTTACGCAGATGCATTTCGCATCGTTCGAGATATAGTTCAGAATCACGCAACATACGGGTTTGAGAATGCCGACTCCGCATGCTGCCACATCGCCGGGCGGTACGGTGGCCTGTTTCCCTGTGGACCGCCGTCGAAAGTGTGTGTAGACAGATCGAAGTACGTGTTTTGGGATTCATTTCATCCTTCTGAAGCTGCGAACTCCATCATCGCCGGGCGGCTCTTGAACGGCGACGCCATTGATATTTGGCCCATCAATATTCGAGAACTAGAACAACGTAATTAA 714 45.1 MDAQLDNFANTRQDIISMIGLPAAIDLLRTSIFSITIGSNDFINNYFTPAFSDSGHRLIPPELFVGSMISRYRLQLTRLYNLGARKIIVVNVGPIGCIPYQRDSNPSLGNNCANSPNLMAQLFNNQLRGLLTELGARFQDSNFLYADAFRIVRDIVQNHATYGFENADSACCHIAGRYGGLFPCGPPSKVCVDRSKYVFWDSFHPSEAANSIIAGRLLNGDAIDIWPINIRELEQRN 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6481821 6482741 + CcPI632755_05g007780.1 Cco05g0778 178406

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco05g0778 237 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE-RELATED 1 234 IPR051238 -
Cco05g0778 237 Pfam GDSL-like Lipase/Acylhydrolase 27 215 IPR001087 GO:0016788(InterPro)
Cco05g0778 237 Gene3D SGNH hydrolase 1 220 IPR036514 -
Cco05g0778 237 SUPERFAMILY SGNH hydrolase 25 219 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco05g0778 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0778 Cco-Chr5:6481821 Cco05g1308 Cco-Chr5:13373623 2.30E-39 dispersed
Cco05g0778 Cco-Chr5:6481821 Cco03g0721 Cco-Chr3:7404989 5.40E-41 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g58 . . . . . . . . . . . Cma14g01587 . Car14g01397 . . Cpe03g01324 Bhi01g01094 . . . . . Lcy11g1334 . . . . . . . . . . Cone4ag0103 . . . Cme06g00793 . Blo07g00140 . . . Bpe13g00700 . Bma06g01464 . . Cmo14g01617 . . . . . . . . . . . . . Cla05g00710 . . Cco05g0778 Clacu05g0767 Cmu05g0733 Cre05g0807 . Csa03g01522 Chy06g00758 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014157 0 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 1 0 1 1 0 1 23